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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9260 and 9261 are separated by 1659 nucleotides
9261 and 9262 are separated by 350 nucleotides
9262 and 9263 are separated by 81 nucleotides
9263 and 9264 are separated by 251 nucleotides
mRNA_892: 9260 - K11827 AP2S1 AP-2 complex subunit sigma-1, at 2,131,150 to 2,131,840
9260
mRNA_893: 9261 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 2,133,500 to 2,134,793
9261
mRNA_894: 9262 - K01694 TRP tryptophan synthase, at 2,135,144 to 2,138,242
9262
mRNA_895: 9263 - Hypothetical Protein, at 2,138,324 to 2,139,177
9263
mRNA_896: 9264 - Hypothetical Protein, at 2,139,429 to 2,140,849
9264
Group
Condition
mRNA
_892
mRNA
_893
mRNA
_894
mRNA
_895
mRNA
_896
9260
9261
9262
9263
9264
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.4
N.D.
-1.3
-0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.0
N.D.
-0.9
-0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.3
N.D.
-0.0
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.2
N.D.
-0.5
+0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
N.D.
+0.0
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.1
N.D.
+0.2
-0.3
growth on ypd
YPD
N.D.
-0.3
N.D.
+0.0
+0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
N.D.
+0.2
-0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.1
N.D.
+0.2
-0.3
auxotrophy
Dropout Complete
N.D.
+0.0
N.D.
+0.7
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.5
N.D.
+1.0
-0.2
auxotrophy
YNB Glucose
N.D.
+0.2
N.D.
+0.1
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.6
N.D.
+0.1
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.2
N.D.
-0.1
+0.4
growth on oleic acid
YNB Glucose
N.D.
+0.2
N.D.
+0.4
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.2
N.D.
+0.2
+0.1
growth on ricinoleic acid
YNB Glucose
N.D.
+0.6
N.D.
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.0
N.D.
+0.6
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.3
N.D.
+0.8
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.0
N.D.
+1.2
-0.4
growth on oleic acid
YNB Oleic Acid
N.D.
+0.5
N.D.
+0.9
+0.0
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