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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9262 and 9263 are separated by 81 nucleotides
9263 and 9264 are separated by 251 nucleotides
9264 and 9265 are separated by 1044 nucleotides
9265 and 9266 are separated by 304 nucleotides
mRNA_894: 9262 - K01694 TRP tryptophan synthase, at 2,135,144 to 2,138,242
9262
mRNA_895: 9263 - Hypothetical Protein, at 2,138,324 to 2,139,177
9263
mRNA_896: 9264 - Hypothetical Protein, at 2,139,429 to 2,140,849
9264
mRNA_897: 9265 - K02955 RP-S14e, RPS14 small subunit ribosomal protein S14e, at 2,141,894 to 2,143,466
9265
mRNA_898: 9266 - K14821 BUD20 bud site selection protein 20, at 2,143,771 to 2,144,401
9266
Group
Condition
mRNA
_894
mRNA
_895
mRNA
_896
mRNA
_897
mRNA
_898
9262
9263
9264
9265
9266
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-1.3
-0.1
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.9
-0.3
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.0
-0.3
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.1
-0.4
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.0
-0.3
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.5
+0.2
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.2
-0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.2
-0.3
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.2
-0.2
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
-0.0
+0.1
N.D.
N.D.
auxotrophy
YNB Glucose
N.D.
+0.1
-0.0
N.D.
N.D.
growth on ypd
YPD
N.D.
+0.0
+0.1
N.D.
N.D.
auxotrophy
Dropout Complete
N.D.
+0.7
-0.5
N.D.
N.D.
growth on oleic acid
YNB Glucose
N.D.
+0.4
-0.2
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.1
+0.4
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.2
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.6
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+1.0
-0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+1.2
-0.4
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
+0.9
+0.0
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.8
+0.2
N.D.
N.D.
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