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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9265 and 9266 are separated by 304 nucleotides
9266 and 9267 are separated by 592 nucleotides
9267 and 9268 are separated by 96 nucleotides
9268 and 9269 are separated by 176 nucleotides
mRNA_897: 9265 - K02955 RP-S14e, RPS14 small subunit ribosomal protein S14e, at 2,141,894 to 2,143,466
9265
mRNA_898: 9266 - K14821 BUD20 bud site selection protein 20, at 2,143,771 to 2,144,401
9266
mRNA_899: 9267 - K00486 KMO kynurenine 3-monooxygenase, at 2,144,994 to 2,146,885
9267
mRNA_900: 9268 - SUPERFAMILY--SSF52266, at 2,146,982 to 2,149,051
9268
mRNA_901: 9269 - SUPERFAMILY--SSF52266, at 2,149,228 to 2,151,284
9269
Group
Condition
mRNA
_897
mRNA
_898
mRNA
_899
mRNA
_900
mRNA
_901
9265
9266
9267
9268
9269
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.4
-0.2
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.1
-0.3
-0.2
auxotrophy
Dropout Complete
N.D.
N.D.
-0.7
+0.0
+0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.3
+0.0
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.5
+0.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+0.0
+0.0
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.5
+0.1
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.6
-0.5
-0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.3
+0.1
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.3
+0.1
+0.3
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.2
-0.1
+0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.5
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.1
+0.0
+0.2
growth on ypd
YPD
N.D.
N.D.
-0.1
+0.0
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-0.1
+0.3
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.5
-0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+0.1
+0.3
-0.1
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.2
+0.1
+0.5
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.5
-0.1
+0.1
auxotrophy
YNB Glucose
N.D.
N.D.
+0.4
+0.0
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.5
+0.1
+0.1
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