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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9267 and 9268 are separated by 96 nucleotides
9268 and 9269 are separated by 176 nucleotides
9269 and 9270 are separated by 349 nucleotides
9270 and 9271 are separated by 285 nucleotides
mRNA_899: 9267 - K00486 KMO kynurenine 3-monooxygenase, at 2,144,994 to 2,146,885
9267
mRNA_900: 9268 - SUPERFAMILY--SSF52266, at 2,146,982 to 2,149,051
9268
mRNA_901: 9269 - SUPERFAMILY--SSF52266, at 2,149,228 to 2,151,284
9269
mRNA_902: 9270 - KOG2398 Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP), at 2,151,634 to 2,155,672
9270
mRNA_903: 9271 - Hypothetical Protein, at 2,155,958 to 2,156,725
9271
Group
Condition
mRNA
_899
mRNA
_900
mRNA
_901
mRNA
_902
mRNA
_903
9267
9268
9269
9270
9271
auxotrophy
Dropout Complete
-0.7
+0.0
+0.2
-0.7
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.1
+0.3
-1.1
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.3
-0.2
-0.4
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.3
-0.1
-0.5
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.2
+0.1
+0.5
-0.7
growth on ricinoleic acid
YNB Glucose
-0.5
+0.1
+0.4
-0.4
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.0
+0.1
-0.3
+0.1
growth on ypd
YPD
-0.1
+0.0
+0.4
-0.6
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
+0.1
+0.2
-0.4
+0.4
ypd buoyancy
40 hrs High Buoyancy
+0.5
-0.2
-0.1
-0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.5
-0.1
+0.1
-0.1
-0.5
growth on oleic acid
YNB Glucose
-0.2
+0.1
+0.5
-0.5
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.5
-0.1
-0.1
-0.1
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.1
+0.2
-0.3
+0.3
growth on oleic acid
YNB Oleic Acid
-0.2
-0.1
+0.3
-0.2
+0.3
auxotrophy
YNB Glucose
+0.4
+0.0
+0.2
-0.3
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.3
+0.1
+0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.0
-0.1
+0.2
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
+0.1
+0.1
+0.3
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.6
-0.5
-0.2
+0.5
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.0
+0.2
+0.6
-0.1
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