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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9269 and 9270 are separated by 349 nucleotides
9270 and 9271 are separated by 285 nucleotides
9271 and 9272 are separated by 1341 nucleotides
9272 and 9273 are separated by 268 nucleotides
mRNA_901: 9269 - SUPERFAMILY--SSF52266, at 2,149,228 to 2,151,284
9269
mRNA_902: 9270 - KOG2398 Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP), at 2,151,634 to 2,155,672
9270
mRNA_903: 9271 - Hypothetical Protein, at 2,155,958 to 2,156,725
9271
mRNA_904: 9272 - K04705 STAM signal transducing adaptor molecule, at 2,158,067 to 2,161,022
9272
mRNA_905: 9273 - KOG4711 Predicted membrane protein, at 2,161,291 to 2,166,616
9273
Group
Condition
mRNA
_901
mRNA
_902
mRNA
_903
mRNA
_904
mRNA
_905
9269
9270
9271
9272
9273
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-1.1
-0.3
-0.2
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.4
-0.2
-0.2
-0.1
auxotrophy
Dropout Complete
+0.2
-0.7
-0.4
-0.0
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
-0.5
-0.3
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.5
-0.6
+0.3
+0.1
growth on ricinoleic acid
YNB Glucose
+0.4
-0.4
-0.1
-0.4
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.1
-0.3
+0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.1
-0.2
-0.1
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.3
+0.1
-0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.5
+0.3
-0.9
+0.1
growth on ypd
YPD
+0.4
-0.6
-0.1
-0.0
+0.2
growth on oleic acid
YNB Glucose
+0.5
-0.5
+0.0
-0.1
+0.0
auxotrophy
YNB Glucose
+0.2
-0.3
+0.0
+0.2
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.3
+0.3
+0.2
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.4
+0.4
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.5
-0.7
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.3
-0.2
+0.3
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.2
-0.1
+0.2
-0.0
growth on oleic acid
YNB Oleic Acid
+0.3
-0.2
+0.3
-0.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.2
+0.4
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.6
-0.1
+0.2
-0.1
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