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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9270 and 9271 are separated by 285 nucleotides
9271 and 9272 are separated by 1341 nucleotides
9272 and 9273 are separated by 268 nucleotides
9273 and 9274 are separated by 85 nucleotides
mRNA_902: 9270 - KOG2398 Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP), at 2,151,634 to 2,155,672
9270
mRNA_903: 9271 - Hypothetical Protein, at 2,155,958 to 2,156,725
9271
mRNA_904: 9272 - K04705 STAM signal transducing adaptor molecule, at 2,158,067 to 2,161,022
9272
mRNA_905: 9273 - KOG4711 Predicted membrane protein, at 2,161,291 to 2,166,616
9273
mRNA_906: 9274 - K15791 DHKTD1 probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, at 2,166,702 to 2,170,290
9274
Group
Condition
mRNA
_902
mRNA
_903
mRNA
_904
mRNA
_905
mRNA
_906
9270
9271
9272
9273
9274
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.1
-0.3
-0.2
+0.1
-0.0
auxotrophy
Dropout Complete
-0.7
-0.4
-0.0
-0.2
-0.0
growth on ricinoleic acid
YNB Glucose
-0.4
-0.1
-0.4
-0.0
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.2
-0.2
-0.1
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.5
-0.3
+0.0
+0.0
growth on oleic acid
YNB Glucose
-0.5
+0.0
-0.1
+0.0
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.1
-0.1
-0.1
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
-0.6
+0.3
+0.1
-0.1
growth on ypd
YPD
-0.6
-0.1
-0.0
+0.2
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.2
-0.1
+0.0
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.3
+0.1
-0.1
-0.0
auxotrophy
YNB Glucose
-0.3
+0.0
+0.2
-0.0
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
+0.3
-0.9
+0.1
-0.1
growth on oleic acid
YNB Oleic Acid
-0.2
+0.3
-0.1
+0.2
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.3
+0.2
-0.1
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
+0.4
+0.1
+0.0
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
-0.7
+0.3
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.1
+0.2
-0.0
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.6
-0.1
+0.2
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.2
+0.3
-0.0
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.4
+0.1
+0.0
+0.4
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