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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9271 and 9272 are separated by 1341 nucleotides
9272 and 9273 are separated by 268 nucleotides
9273 and 9274 are separated by 85 nucleotides
9274 and 9275 are separated by 596 nucleotides
mRNA_903: 9271 - Hypothetical Protein, at 2,155,958 to 2,156,725
9271
mRNA_904: 9272 - K04705 STAM signal transducing adaptor molecule, at 2,158,067 to 2,161,022
9272
mRNA_905: 9273 - KOG4711 Predicted membrane protein, at 2,161,291 to 2,166,616
9273
mRNA_906: 9274 - K15791 DHKTD1 probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, at 2,166,702 to 2,170,290
9274
mRNA_907: 9275 - K20523 SH3YL1 SH3 domain-containing YSC84-like protein 1, at 2,170,887 to 2,172,443
9275
Group
Condition
mRNA
_903
mRNA
_904
mRNA
_905
mRNA
_906
mRNA
_907
9271
9272
9273
9274
9275
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.2
+0.1
-0.0
-0.9
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.9
+0.1
-0.1
-0.5
ypd buoyancy
40 hrs Median Buoyancy
-0.5
-0.3
+0.0
+0.0
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.2
-0.1
-0.0
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.1
+0.0
-0.1
-0.1
auxotrophy
Dropout Complete
-0.4
-0.0
-0.2
-0.0
+0.3
growth on ricinoleic acid
YNB Glucose
-0.1
-0.4
-0.0
-0.2
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.1
-0.1
-0.0
+0.1
growth on oleic acid
YNB Oleic Acid
+0.3
-0.1
+0.2
-0.2
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.1
-0.1
-0.3
+0.4
growth on oleic acid
YNB Glucose
+0.0
-0.1
+0.0
-0.3
+0.2
growth on ypd
YPD
-0.1
-0.0
+0.2
+0.0
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
+0.3
+0.1
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.2
-0.1
-0.0
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
+0.1
+0.0
+0.3
-0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.7
+0.3
+0.1
+0.2
+0.2
auxotrophy
YNB Glucose
+0.0
+0.2
-0.0
-0.1
+0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.2
-0.0
+0.2
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.3
-0.0
+0.3
+0.5
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.2
-0.1
-0.0
+0.7
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
+0.1
+0.0
+0.4
+0.3
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