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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9274 and 9275 are separated by 596 nucleotides
9275 and 9276 are separated by 87 nucleotides
9276 and 9277 are separated by 290 nucleotides
9277 and 9278 are separated by 525 nucleotides
mRNA_906: 9274 - K15791 DHKTD1 probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, at 2,166,702 to 2,170,290
9274
mRNA_907: 9275 - K20523 SH3YL1 SH3 domain-containing YSC84-like protein 1, at 2,170,887 to 2,172,443
9275
mRNA_908: 9276 - Hypothetical Protein, at 2,172,531 to 2,173,610
9276
mRNA_909: 9277 - KOG0254 Predicted transporter (major facilitator superfamily), at 2,173,901 to 2,176,309
9277
mRNA_910: 9278 - K00794 ribH, RIB4 6,7-dimethyl-8-ribityllumazine synthase, at 2,176,835 to 2,177,637
9278
Group
Condition
mRNA
_906
mRNA
_907
mRNA
_908
mRNA
_909
mRNA
_910
9274
9275
9276
9277
9278
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.9
+0.3
+0.1
N.D.
growth on oleic acid
YNB Oleic Acid
-0.2
-0.3
+0.1
+0.2
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.5
+0.3
+0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.1
-0.1
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.1
+0.5
-0.5
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.2
-0.0
+0.3
N.D.
growth on ypd
YPD
+0.0
-0.2
+0.4
-0.1
N.D.
auxotrophy
Dropout Complete
-0.0
+0.3
-0.0
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.4
+0.2
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.1
-0.0
+0.2
N.D.
growth on ricinoleic acid
YNB Glucose
-0.2
+0.3
+0.2
-0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
-0.7
+0.4
+0.3
N.D.
growth on oleic acid
YNB Glucose
-0.3
+0.2
+0.3
+0.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.2
+0.1
+0.3
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.2
+0.3
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.2
+0.1
-0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
+0.3
-0.0
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.7
+0.2
+0.0
N.D.
auxotrophy
YNB Glucose
-0.1
+0.6
+0.2
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.5
+0.3
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.5
+0.5
+0.3
N.D.
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