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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9277 and 9278 are separated by 525 nucleotides
9278 and 9279 are separated by 331 nucleotides
9279 and 9280 are separated by 349 nucleotides
9280 and 9281 are separated by 12 nucleotides
mRNA_909: 9277 - KOG0254 Predicted transporter (major facilitator superfamily), at 2,173,901 to 2,176,309
9277
mRNA_910: 9278 - K00794 ribH, RIB4 6,7-dimethyl-8-ribityllumazine synthase, at 2,176,835 to 2,177,637
9278
mRNA_911: 9279 - KOG1773 Stress responsive protein, at 2,177,969 to 2,178,702
9279
mRNA_912: 9280 - Hypothetical Protein, at 2,179,052 to 2,180,263
9280
mRNA_913: 9281 - Hypothetical Protein, at 2,180,276 to 2,181,730
9281
Group
Condition
mRNA
_909
mRNA
_910
mRNA
_911
mRNA
_912
mRNA
_913
9277
9278
9279
9280
9281
ypd buoyancy
40 hrs Low Buoyancy
+0.2
N.D.
-0.1
-0.1
-1.7
auxotrophy
YNB Glucose
+0.3
N.D.
-0.2
+0.2
-1.9
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
N.D.
-0.4
-0.1
-1.3
auxotrophy
YNB Glucose 75mM Methionine
+0.0
N.D.
-0.0
+0.2
-1.7
auxotrophy
Dropout Complete
-0.1
N.D.
+0.0
-0.2
-1.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
N.D.
+0.2
+0.2
-1.1
growth on ricinoleic acid
YNB Glucose
-0.1
N.D.
-0.6
+0.2
-0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.3
N.D.
+0.0
-0.2
-0.8
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
N.D.
+0.3
-0.1
-0.7
growth on oleic acid
YNB Glucose
+0.2
N.D.
+0.4
+0.1
-1.0
growth on ypd
YPD
-0.1
N.D.
-0.1
+0.4
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
N.D.
+0.0
-0.3
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
N.D.
-0.4
+0.0
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
N.D.
-0.3
-0.2
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.3
N.D.
+0.0
+0.2
-0.3
growth on oleic acid
YNB Oleic Acid
+0.2
N.D.
+0.5
-0.1
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
N.D.
-0.0
+0.5
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
N.D.
+0.6
+0.9
-0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
N.D.
+0.3
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
N.D.
+0.3
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
N.D.
+0.1
+0.3
+0.6
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