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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9279 and 9280 are separated by 349 nucleotides
9280 and 9281 are separated by 12 nucleotides
9281 and 9282 are separated by 415 nucleotides
9282 and 9283 are separated by 306 nucleotides
mRNA_911: 9279 - KOG1773 Stress responsive protein, at 2,177,969 to 2,178,702
9279
mRNA_912: 9280 - Hypothetical Protein, at 2,179,052 to 2,180,263
9280
mRNA_913: 9281 - Hypothetical Protein, at 2,180,276 to 2,181,730
9281
mRNA_914: 9282 - K10903 HUS1 HUS1 checkpoint protein, at 2,182,146 to 2,183,559
9282
mRNA_915: 9283 - K01950 E6.3.5.1, NADSYN1, QNS1, nadE NAD+ synthase (glutamine-hydrolysing), at 2,183,866 to 2,186,903
9283
Group
Condition
mRNA
_911
mRNA
_912
mRNA
_913
mRNA
_914
mRNA
_915
9279
9280
9281
9282
9283
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-0.1
-1.3
-2.3
-0.6
growth on ypd
YPD
-0.1
+0.4
-0.3
-1.1
-2.8
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+0.5
-0.5
-1.1
-1.8
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.3
+0.0
-0.9
-1.9
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.1
-1.7
+0.3
-1.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.2
+0.2
-1.0
-1.1
growth on ricinoleic acid
YNB Glucose
-0.6
+0.2
-0.4
-1.3
-0.1
auxotrophy
YNB Glucose
-0.2
+0.2
-1.9
-0.9
+0.7
auxotrophy
Dropout Complete
+0.0
-0.2
-1.1
-1.1
+0.5
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.2
-1.7
-0.2
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.3
+0.2
-1.3
-1.3
growth on oleic acid
YNB Glucose
+0.4
+0.1
-1.0
-0.3
-0.7
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.2
-1.1
-0.8
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
+0.0
+0.5
-0.8
-0.6
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.2
-0.8
+0.3
-0.4
growth on oleic acid
YNB Oleic Acid
+0.5
-0.1
-0.2
+0.3
-0.8
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.6
+0.9
-0.6
-1.0
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.3
+0.2
-0.9
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.2
-0.3
+0.7
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.3
+0.6
+0.0
-0.8
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.1
-0.7
+0.6
+1.6
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