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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9282 and 9283 are separated by 306 nucleotides
9283 and 9284 are separated by 1145 nucleotides
9284 and 9285 are separated by 1117 nucleotides
9285 and 9286 are separated by 274 nucleotides
mRNA_914: 9282 - K10903 HUS1 HUS1 checkpoint protein, at 2,182,146 to 2,183,559
9282
mRNA_915: 9283 - K01950 E6.3.5.1, NADSYN1, QNS1, nadE NAD+ synthase (glutamine-hydrolysing), at 2,183,866 to 2,186,903
9283
mRNA_916: 9284 - HMMPfam-Activator of mitotic machinery Cdc14 phosphatase activation C-term-PF08632, at 2,188,049 to 2,189,443
9284
mRNA_917: 9285 - Hypothetical Protein, at 2,190,561 to 2,191,088
9285
mRNA_918: 9286 - K10770 ALKBH8 alkylated DNA repair protein alkB homolog 8, at 2,191,363 to 2,192,706
9286
Group
Condition
mRNA
_914
mRNA
_915
mRNA
_916
mRNA
_917
mRNA
_918
9282
9283
9284
9285
9286
facs on lipid accumulation
Sorted No BODIPY Gate
-0.9
-1.9
-0.8
-0.4
-0.8
facs on lipid accumulation
Sorted High BODIPY Gate
-1.1
-1.8
-0.4
+0.0
-1.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-2.3
-0.6
-0.3
-0.4
-0.2
growth on ricinoleic acid
YNB Glucose
-1.3
-0.1
-1.1
-0.2
-0.5
growth on ypd
YPD
-1.1
-2.8
+0.5
+0.4
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.8
-0.6
-0.6
-0.2
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.0
-1.1
-0.4
-0.1
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.8
+0.1
-0.7
-0.2
-0.5
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.3
-1.2
-0.1
-0.4
auxotrophy
YNB Glucose
-0.9
+0.7
-0.8
-0.4
-0.3
growth on oleic acid
YNB Glucose
-0.3
-0.7
-0.4
+0.3
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.3
-1.3
+1.3
-0.0
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.3
-0.4
-0.1
-0.4
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-1.1
+0.6
-0.3
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.0
-0.2
+1.1
-0.1
-0.2
auxotrophy
Dropout Complete
-1.1
+0.5
+0.5
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.8
+0.2
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.9
-0.2
+0.9
-0.0
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.7
-0.5
+0.1
-0.4
+0.1
growth on oleic acid
YNB Oleic Acid
+0.3
-0.8
+0.7
+0.2
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.6
+1.6
-0.3
-0.2
+1.0
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