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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9284 and 9285 are separated by 1117 nucleotides
9285 and 9286 are separated by 274 nucleotides
9286 and 9287 are separated by 166 nucleotides
9287 and 9288 are separated by 647 nucleotides
mRNA_916: 9284 - HMMPfam-Activator of mitotic machinery Cdc14 phosphatase activation C-term-PF08632, at 2,188,049 to 2,189,443
9284
mRNA_917: 9285 - Hypothetical Protein, at 2,190,561 to 2,191,088
9285
mRNA_918: 9286 - K10770 ALKBH8 alkylated DNA repair protein alkB homolog 8, at 2,191,363 to 2,192,706
9286
mRNA_919: 9287 - KOG1397 Ca2+/H+ antiporter VCX1 and related proteins, at 2,192,873 to 2,195,509
9287
mRNA_920: 9288 - BLAST cytochrome c heme-binding site [Moesziomyces anta..., at 2,196,157 to 2,196,942
9288
Group
Condition
mRNA
_916
mRNA
_917
mRNA
_918
mRNA
_919
mRNA
_920
9284
9285
9286
9287
9288
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
+0.0
-1.3
-0.2
-0.5
growth on ricinoleic acid
YNB Glucose
-1.1
-0.2
-0.5
-0.0
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.8
-0.4
-0.8
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-1.2
-0.1
-0.4
-0.0
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.6
-0.2
-0.4
+0.0
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.4
-0.2
-0.1
-0.6
auxotrophy
YNB Glucose
-0.8
-0.4
-0.3
+0.0
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.7
-0.2
-0.5
-0.1
+0.1
growth on oleic acid
YNB Glucose
-0.4
+0.3
-0.4
-0.1
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
-0.1
-0.0
+0.1
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.4
+0.0
+0.1
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.4
+0.1
+0.1
+0.1
growth on oleic acid
YNB Oleic Acid
+0.7
+0.2
-0.4
-0.2
-0.4
auxotrophy
Dropout Complete
+0.5
-0.1
-0.3
-0.1
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.2
+1.0
+0.2
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.6
-0.3
+0.0
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.2
+0.0
+0.2
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+1.1
-0.1
-0.2
-0.1
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.9
-0.0
+0.1
+0.1
+0.1
growth on ypd
YPD
+0.5
+0.4
+0.4
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.3
-0.0
+0.3
+0.0
+0.1
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