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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9286 and 9287 are separated by 166 nucleotides
9287 and 9288 are separated by 647 nucleotides
9288 and 9289 are separated by 137 nucleotides
9289 and 9290 are separated by 326 nucleotides
mRNA_918: 9286 - K10770 ALKBH8 alkylated DNA repair protein alkB homolog 8, at 2,191,363 to 2,192,706
9286
mRNA_919: 9287 - KOG1397 Ca2+/H+ antiporter VCX1 and related proteins, at 2,192,873 to 2,195,509
9287
mRNA_920: 9288 - BLAST cytochrome c heme-binding site [Moesziomyces anta..., at 2,196,157 to 2,196,942
9288
mRNA_921: 9289 - KOG1485 Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily), at 2,197,080 to 2,198,559
9289
mRNA_922: 9290 - K06110 EXOC3, SEC6 exocyst complex component 3, at 2,198,886 to 2,201,562
9290
Group
Condition
mRNA
_918
mRNA
_919
mRNA
_920
mRNA
_921
mRNA
_922
9286
9287
9288
9289
9290
facs on lipid accumulation
Sorted High BODIPY Gate
-1.3
-0.2
-0.5
+0.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.1
-0.6
-0.5
N.D.
growth on oleic acid
YNB Glucose
-0.4
-0.1
-0.4
+0.2
N.D.
growth on ricinoleic acid
YNB Glucose
-0.5
-0.0
-0.4
+0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.8
-0.1
-0.1
+0.2
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+1.0
+0.2
-0.3
-1.6
N.D.
growth on oleic acid
YNB Oleic Acid
-0.4
-0.2
-0.4
+0.5
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
+0.0
-0.5
+0.7
N.D.
auxotrophy
YNB Glucose
-0.3
+0.0
-0.0
+0.3
N.D.
auxotrophy
Dropout Complete
-0.3
-0.1
+0.3
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.0
+0.1
+0.5
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.1
+0.1
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.1
+0.1
+0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.1
+0.0
+0.4
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.5
-0.1
+0.1
+1.0
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
+0.1
-0.3
+1.0
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.1
+0.5
+0.7
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.2
+0.5
+0.3
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.2
+0.1
+0.8
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.0
+0.1
+1.1
N.D.
growth on ypd
YPD
+0.4
+0.2
+0.2
+1.1
N.D.
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