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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9288 and 9289 are separated by 137 nucleotides
9289 and 9290 are separated by 326 nucleotides
9290 and 9291 are separated by 456 nucleotides
9291 and 9292 are separated by 317 nucleotides
mRNA_920: 9288 - BLAST cytochrome c heme-binding site [Moesziomyces anta..., at 2,196,157 to 2,196,942
9288
mRNA_921: 9289 - KOG1485 Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily), at 2,197,080 to 2,198,559
9289
mRNA_922: 9290 - K06110 EXOC3, SEC6 exocyst complex component 3, at 2,198,886 to 2,201,562
9290
mRNA_923: 9291 - K03446 emrB MFS transporter, DHA2 family, multidrug resistance protein, at 2,202,019 to 2,204,450
9291
mRNA_924: 9292 - KOG0798 Uncharacterized conserved protein, at 2,204,768 to 2,206,248
9292
Group
Condition
mRNA
_920
mRNA
_921
mRNA
_922
mRNA
_923
mRNA
_924
9288
9289
9290
9291
9292
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-1.6
N.D.
-0.2
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
-0.5
N.D.
-0.0
-0.0
growth on ricinoleic acid
YNB Glucose
-0.4
+0.1
N.D.
-0.1
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
+0.2
N.D.
+0.4
-0.5
growth on oleic acid
YNB Glucose
-0.4
+0.2
N.D.
+0.0
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
+0.7
N.D.
-0.1
-0.3
growth on oleic acid
YNB Oleic Acid
-0.4
+0.5
N.D.
-0.1
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.0
N.D.
-0.1
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.2
N.D.
+0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.4
N.D.
-0.0
+0.0
auxotrophy
Dropout Complete
+0.3
+0.2
N.D.
+0.1
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
+1.0
N.D.
+0.1
-0.1
auxotrophy
YNB Glucose
-0.0
+0.3
N.D.
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.1
N.D.
-0.0
+0.5
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.5
N.D.
+0.2
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.8
N.D.
-0.1
+0.0
growth on ypd
YPD
+0.2
+1.1
N.D.
+0.0
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
+0.3
N.D.
+0.1
+0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+1.0
N.D.
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
+0.7
N.D.
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+1.1
N.D.
-0.1
+0.4
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