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Fitness for 4 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9298 and 9299 are separated by 237 nucleotides
9299 and 9300 are separated by 508 nucleotides
9300 and 9301 are separated by 1465 nucleotides
mRNA_930: 9298 - K00861 RFK, FMN1 riboflavin kinase, at 359 to 1,600
9298
mRNA_931: 9299 - K14794 RRP12 ribosomal RNA-processing protein 12, at 1,838 to 6,021
9299
mRNA_932: 9300 - K01803 TPI, tpiA triosephosphate isomerase (TIM), at 6,530 to 8,158
9300
mRNA_933: 9301 - HMMPfam-NDT80 / PhoG like DNA-binding family-PF05224,ProSiteProfiles-NDT80 DNA-binding domain profile.-PS51517,SUPERFAMILY--SSF49417, at 9,624 to 11,846
9301
Group
Condition
mRNA
_930
mRNA
_931
mRNA
_932
mRNA
_933
9298
9299
9300
9301
ypd buoyancy
40 hrs No Buoyancy Separation
-1.2
N.D.
N.D.
-0.8
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.9
N.D.
N.D.
+0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.4
N.D.
N.D.
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
N.D.
N.D.
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.7
N.D.
N.D.
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.2
N.D.
N.D.
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.7
N.D.
N.D.
+0.4
growth on ricinoleic acid
YNB Glucose
-0.1
N.D.
N.D.
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
N.D.
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
N.D.
N.D.
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.3
N.D.
N.D.
-0.4
auxotrophy
Dropout Complete
-0.1
N.D.
N.D.
+0.0
auxotrophy
YNB Glucose
+0.3
N.D.
N.D.
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
N.D.
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.3
N.D.
N.D.
-0.3
growth on oleic acid
YNB Glucose
+0.2
N.D.
N.D.
+0.0
growth on oleic acid
YNB Oleic Acid
+0.6
N.D.
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
N.D.
N.D.
+0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
N.D.
N.D.
+0.6
auxotrophy
YNB Glucose 75mM Arginine
+0.6
N.D.
N.D.
-0.1
growth on ypd
YPD
+0.7
N.D.
N.D.
+0.8
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