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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9299 and 9300 are separated by 508 nucleotides
9300 and 9301 are separated by 1465 nucleotides
9301 and 9302 are separated by 239 nucleotides
9302 and 9303 are separated by 239 nucleotides
mRNA_931: 9299 - K14794 RRP12 ribosomal RNA-processing protein 12, at 1,838 to 6,021
9299
mRNA_932: 9300 - K01803 TPI, tpiA triosephosphate isomerase (TIM), at 6,530 to 8,158
9300
mRNA_933: 9301 - HMMPfam-NDT80 / PhoG like DNA-binding family-PF05224,ProSiteProfiles-NDT80 DNA-binding domain profile.-PS51517,SUPERFAMILY--SSF49417, at 9,624 to 11,846
9301
mRNA_934: 9302 - K18726 FAF2, UBXD8 FAS-associated factor 2, at 12,086 to 14,306
9302
mRNA_935: 9303 - HMMPfam-Glycosyl Hydrolase Family 88-PF07470,SUPERFAMILY--SSF48208, at 14,546 to 16,225
9303
Group
Condition
mRNA
_931
mRNA
_932
mRNA
_933
mRNA
_934
mRNA
_935
9299
9300
9301
9302
9303
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.4
-0.2
-0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.1
-0.3
-0.2
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.2
-0.4
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.8
+0.2
+0.1
auxotrophy
Dropout Complete
N.D.
N.D.
+0.0
-0.4
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.3
-0.2
+0.1
auxotrophy
YNB Glucose
N.D.
N.D.
-0.3
-0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+0.5
-0.9
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.1
-0.4
+0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.2
+0.2
-0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.3
+0.2
-0.0
growth on ypd
YPD
N.D.
N.D.
+0.8
-1.1
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.0
-0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.1
+0.4
-0.1
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.0
+0.2
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+0.4
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.5
-0.3
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
+0.3
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.6
-0.2
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.6
-0.0
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
+0.2
+1.0
-0.1
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