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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9300 and 9301 are separated by 1465 nucleotides
9301 and 9302 are separated by 239 nucleotides
9302 and 9303 are separated by 239 nucleotides
9303 and 9304 are separated by 444 nucleotides
mRNA_932: 9300 - K01803 TPI, tpiA triosephosphate isomerase (TIM), at 6,530 to 8,158
9300
mRNA_933: 9301 - HMMPfam-NDT80 / PhoG like DNA-binding family-PF05224,ProSiteProfiles-NDT80 DNA-binding domain profile.-PS51517,SUPERFAMILY--SSF49417, at 9,624 to 11,846
9301
mRNA_934: 9302 - K18726 FAF2, UBXD8 FAS-associated factor 2, at 12,086 to 14,306
9302
mRNA_935: 9303 - HMMPfam-Glycosyl Hydrolase Family 88-PF07470,SUPERFAMILY--SSF48208, at 14,546 to 16,225
9303
mRNA_936: 9304 - K10365 CAPZB capping protein (actin filament) muscle Z-line, beta, at 16,670 to 18,291
9304
Group
Condition
mRNA
_932
mRNA
_933
mRNA
_934
mRNA
_935
mRNA
_936
9300
9301
9302
9303
9304
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.4
-0.2
-0.3
-0.3
auxotrophy
Dropout Complete
N.D.
+0.0
-0.4
-0.1
-0.5
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.8
+0.2
+0.1
-0.4
auxotrophy
YNB Glucose
N.D.
-0.3
-0.1
-0.1
-0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.1
-0.3
-0.2
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.5
-0.9
+0.1
-0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.2
+0.2
-0.2
-0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.3
+0.2
-0.0
-0.0
growth on oleic acid
YNB Oleic Acid
N.D.
-0.3
-0.2
+0.1
+0.3
growth on ricinoleic acid
YNB Glucose
N.D.
-0.2
-0.4
+0.1
+0.5
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.4
+0.1
-0.1
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.1
-0.4
+0.2
+0.5
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
+0.4
-0.1
+0.1
growth on ypd
YPD
N.D.
+0.8
-1.1
+0.2
+0.4
growth on oleic acid
YNB Glucose
N.D.
+0.0
+0.2
+0.0
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.0
-0.1
+0.2
+0.9
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.5
-0.3
+0.2
+0.6
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.2
+1.0
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.3
-0.1
+0.3
+0.9
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.6
-0.2
+0.3
+1.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.6
-0.0
+0.1
+1.2
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