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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9301 and 9302 are separated by 239 nucleotides
9302 and 9303 are separated by 239 nucleotides
9303 and 9304 are separated by 444 nucleotides
9304 and 9305 are separated by 1049 nucleotides
mRNA_933: 9301 - HMMPfam-NDT80 / PhoG like DNA-binding family-PF05224,ProSiteProfiles-NDT80 DNA-binding domain profile.-PS51517,SUPERFAMILY--SSF49417, at 9,624 to 11,846
9301
mRNA_934: 9302 - K18726 FAF2, UBXD8 FAS-associated factor 2, at 12,086 to 14,306
9302
mRNA_935: 9303 - HMMPfam-Glycosyl Hydrolase Family 88-PF07470,SUPERFAMILY--SSF48208, at 14,546 to 16,225
9303
mRNA_936: 9304 - K10365 CAPZB capping protein (actin filament) muscle Z-line, beta, at 16,670 to 18,291
9304
mRNA_937: 9305 - KOG1721 FOG Zn-finger, at 19,341 to 20,725
9305
Group
Condition
mRNA
_933
mRNA
_934
mRNA
_935
mRNA
_936
mRNA
_937
9301
9302
9303
9304
9305
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.2
-0.3
-0.3
-0.1
auxotrophy
YNB Glucose
-0.3
-0.1
-0.1
-0.3
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
-0.9
+0.1
-0.2
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.8
+0.2
+0.1
-0.4
+0.1
auxotrophy
Dropout Complete
+0.0
-0.4
-0.1
-0.5
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.3
-0.2
-0.2
-0.1
growth on ricinoleic acid
YNB Glucose
-0.2
-0.4
+0.1
+0.5
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
+0.1
-0.1
-0.3
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.2
-0.2
-0.0
+0.2
growth on oleic acid
YNB Oleic Acid
-0.3
-0.2
+0.1
+0.3
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.2
-0.0
-0.0
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.4
-0.1
+0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.4
+0.2
+0.5
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+1.0
-0.1
+0.0
-0.8
growth on ypd
YPD
+0.8
-1.1
+0.2
+0.4
+0.2
growth on oleic acid
YNB Glucose
+0.0
+0.2
+0.0
+0.3
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.1
+0.2
+0.9
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
-0.3
+0.2
+0.6
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
-0.0
+0.1
+1.2
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.1
+0.3
+0.9
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
-0.2
+0.3
+1.0
+1.5
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