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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9308 and 9309 are separated by 311 nucleotides
9309 and 9310 are separated by 98 nucleotides
9310 and 9311 are separated by 187 nucleotides
9311 and 9312 are separated by 705 nucleotides
mRNA_940: 9308 - Hypothetical Protein, at 25,419 to 26,964
9308
mRNA_941: 9309 - HMMPfam-Calcineurin-like phosphoesterase-PF00149,SUPERFAMILY--SSF56300, at 27,276 to 29,421
9309
mRNA_942: 9310 - KOG1743 Ferric reductase-like proteins, at 29,520 to 30,621
9310
mRNA_943: 9311 - K05759 PFN profilin, at 30,809 to 31,667
9311
mRNA_944: 9312 - Hypothetical Protein, at 32,373 to 33,071
9312
Group
Condition
mRNA
_940
mRNA
_941
mRNA
_942
mRNA
_943
mRNA
_944
9308
9309
9310
9311
9312
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.1
-0.2
N.D.
-0.7
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
-0.4
N.D.
+0.2
growth on ypd
YPD
+0.1
-0.2
+0.2
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
+0.0
-0.2
N.D.
+0.0
growth on ricinoleic acid
YNB Glucose
+0.1
-0.4
+0.4
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.2
-0.4
N.D.
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.1
+0.4
N.D.
+0.1
auxotrophy
Dropout Complete
+0.1
-0.4
+1.1
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.3
+0.4
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.3
+0.7
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.2
+0.1
N.D.
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.3
+0.7
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.1
+0.5
N.D.
+0.2
auxotrophy
YNB Glucose
+0.3
-0.3
+0.8
N.D.
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.4
+0.6
N.D.
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.2
+0.9
N.D.
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.1
+1.3
N.D.
-0.1
growth on oleic acid
YNB Glucose
+0.2
+0.1
+0.4
N.D.
+0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.5
+0.6
N.D.
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.4
+1.8
N.D.
-0.4
growth on oleic acid
YNB Oleic Acid
+0.3
+0.1
+0.9
N.D.
+0.5
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