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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9314 and 9315 are separated by 152 nucleotides
9315 and 9316 are separated by 119 nucleotides
9316 and 9317 are separated by 442 nucleotides
9317 and 9318 are separated by 202 nucleotides
mRNA_946: 9314 - Hypothetical Protein, at 38,031 to 38,831
9314
mRNA_947: 9315 - K00623 CHAT choline O-acetyltransferase, at 38,984 to 41,581
9315
mRNA_948: 9316 - KOG2641 Predicted seven transmembrane receptor - rhodopsin family, at 41,701 to 44,858
9316
mRNA_949: 9317 - KOG1268 Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains, at 45,301 to 46,716
9317
mRNA_950: 9318 - Hypothetical Protein, at 46,919 to 47,823
9318
Group
Condition
mRNA
_946
mRNA
_947
mRNA
_948
mRNA
_949
mRNA
_950
9314
9315
9316
9317
9318
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.3
-0.3
-0.2
-0.4
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.5
-0.3
-0.2
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.4
-0.2
-0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.4
-0.1
-0.2
+0.0
growth on oleic acid
YNB Oleic Acid
-0.1
+0.0
-0.1
-0.0
-0.0
growth on ricinoleic acid
YNB Glucose
-0.1
+0.0
-0.0
+0.1
-0.1
growth on oleic acid
YNB Glucose
+0.1
+0.0
-0.1
-0.1
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-0.2
-0.0
+0.0
-0.1
growth on ypd
YPD
+0.1
+0.0
+0.0
+0.1
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.3
-0.1
-0.3
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.2
+0.2
-0.2
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.0
+0.0
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.0
-0.0
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
-0.2
-0.1
-0.0
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.3
+0.1
+0.4
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
+0.1
-0.2
-0.2
+0.3
auxotrophy
YNB Glucose
+0.1
+0.7
-0.1
-0.3
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.6
-0.1
-0.2
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.4
+0.0
-0.0
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.7
+0.1
-0.2
+0.1
+0.2
auxotrophy
Dropout Complete
+0.3
+0.8
+0.0
+0.0
-0.1
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