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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9322 and 9323 are separated by 918 nucleotides
9323 and 9324 are separated by 297 nucleotides
9324 and 9325 are separated by 939 nucleotides
9325 and 9326 are separated by 545 nucleotides
mRNA_954: 9322 - K16261 YAT yeast amino acid transporter, at 55,166 to 57,720
9322
mRNA_955: 9323 - Hypothetical Protein, at 58,639 to 63,739
9323
mRNA_956: 9324 - KOG2466 Uridine permease/thiamine transporter/allantoin transport, at 64,037 to 66,119
9324
mRNA_957: 9325 - K07160 K07160 UPF0271 protein, at 67,059 to 67,959
9325
mRNA_958: 9326 - K14541 DUR1 urea carboxylase / allophanate hydrolase, at 68,505 to 72,950
9326
Group
Condition
mRNA
_954
mRNA
_955
mRNA
_956
mRNA
_957
mRNA
_958
9322
9323
9324
9325
9326
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
+0.1
-0.6
-0.2
-0.2
auxotrophy
Dropout Complete
-0.5
-0.0
-0.0
-0.2
+0.1
growth on ricinoleic acid
YNB Glucose
-0.5
-0.0
+0.2
-0.3
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.7
-0.0
+0.1
-0.0
+0.1
growth on ypd
YPD
-0.5
+0.1
+0.1
-0.3
+0.0
growth on oleic acid
YNB Oleic Acid
-0.4
+0.0
-0.1
-0.1
+0.1
auxotrophy
YNB Glucose
-0.3
-0.0
+0.2
-0.3
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.5
-0.1
+0.6
-0.2
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
+0.0
+0.0
+0.0
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.1
+0.4
-0.1
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.1
+0.0
-0.2
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.2
+0.2
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.5
-0.2
+0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.4
+0.4
+0.2
-0.0
-0.0
growth on oleic acid
YNB Glucose
-0.1
+0.1
+0.0
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.2
+0.1
+0.1
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
-0.2
+0.1
-0.5
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
+0.3
+0.1
+0.2
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.1
+0.2
-0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.0
+0.3
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.3
+0.5
+0.6
+0.0
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