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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9325 and 9326 are separated by 545 nucleotides
9326 and 9327 are separated by 182 nucleotides
9327 and 9328 are separated by 618 nucleotides
9328 and 9329 are separated by 553 nucleotides
mRNA_957: 9325 - K07160 K07160 UPF0271 protein, at 67,059 to 67,959
9325
mRNA_958: 9326 - K14541 DUR1 urea carboxylase / allophanate hydrolase, at 68,505 to 72,950
9326
mRNA_959: 9327 - Hypothetical Protein, at 73,133 to 74,885
9327
mRNA_960: 9328 - K20409 WDR59 WD repeat-containing protein 59, at 75,504 to 80,689
9328
mRNA_961: 9329 - Hypothetical Protein, at 81,243 to 82,808
9329
Group
Condition
mRNA
_957
mRNA
_958
mRNA
_959
mRNA
_960
mRNA
_961
9325
9326
9327
9328
9329
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.1
+0.4
-0.1
-3.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+0.1
-0.3
-0.4
-1.6
growth on oleic acid
YNB Oleic Acid
-0.1
+0.1
+0.3
-0.1
-2.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
+0.1
+0.2
-0.3
-1.6
facs on lipid accumulation
Sorted No BODIPY Gate
-0.5
+0.4
-0.1
-0.2
-1.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.1
+0.0
-0.0
-0.7
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.0
+0.4
-0.0
-0.8
growth on ricinoleic acid
YNB Glucose
-0.3
+0.0
+0.3
-0.1
-0.4
auxotrophy
Dropout Complete
-0.2
+0.1
+0.1
-0.2
-0.2
growth on oleic acid
YNB Glucose
+0.2
+0.0
+0.0
+0.0
-0.6
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.1
+0.3
-0.1
-0.5
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.1
+0.4
-0.1
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.0
+0.3
-0.2
-0.2
growth on ypd
YPD
-0.3
+0.0
+0.4
-0.0
-0.1
auxotrophy
YNB Glucose
-0.3
+0.1
+0.1
-0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.1
+0.2
+0.0
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.6
+0.0
-0.4
+0.1
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.1
+0.4
-0.1
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.0
-0.2
+0.4
+0.8
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.2
+0.9
+0.1
+0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.0
-0.0
+0.0
+1.5
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