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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9328 and 9329 are separated by 553 nucleotides
9329 and 9330 are separated by 164 nucleotides
9330 and 9331 are separated by 560 nucleotides
9331 and 9332 are separated by 810 nucleotides
mRNA_960: 9328 - K20409 WDR59 WD repeat-containing protein 59, at 75,504 to 80,689
9328
mRNA_961: 9329 - Hypothetical Protein, at 81,243 to 82,808
9329
mRNA_962: 9330 - Hypothetical Protein, at 82,973 to 83,563
9330
mRNA_963: 9331 - K15109 SLC25A20_29, CACT, CACL, CRC1 solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29, at 84,124 to 85,910
9331
mRNA_964: 9332 - Hypothetical Protein, at 86,721 to 89,416
9332
Group
Condition
mRNA
_960
mRNA
_961
mRNA
_962
mRNA
_963
mRNA
_964
9328
9329
9330
9331
9332
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-3.3
-0.2
-6.2
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-1.6
-0.4
-6.1
+0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-1.6
-0.0
-6.0
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-1.0
+0.3
-6.1
+0.3
growth on oleic acid
YNB Oleic Acid
-0.1
-2.2
-0.4
-3.8
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.4
+0.6
-7.5
+0.3
growth on ricinoleic acid
YNB Glucose
-0.1
-0.4
+0.0
-1.8
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.2
-0.3
-1.2
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.4
-0.3
-0.8
+0.1
auxotrophy
Dropout Complete
-0.2
-0.2
-0.2
-0.6
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.8
+0.1
-0.2
+0.0
auxotrophy
YNB Glucose
-0.1
+0.2
-0.0
-0.9
+0.0
growth on ypd
YPD
-0.0
-0.1
+0.3
-1.2
+0.2
growth on oleic acid
YNB Glucose
+0.0
-0.6
+0.2
-0.5
+0.4
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.5
-0.5
+0.9
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.7
+0.0
+0.4
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.0
-0.0
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.3
+0.4
+0.1
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.8
+0.2
+0.3
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+1.5
+0.5
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.8
-0.3
+1.2
+0.2
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