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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9331 and 9332 are separated by 810 nucleotides
9332 and 9333 are separated by 661 nucleotides
9333 and 9334 are separated by 582 nucleotides
9334 and 9335 are separated by 1985 nucleotides
mRNA_963: 9331 - K15109 SLC25A20_29, CACT, CACL, CRC1 solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29, at 84,124 to 85,910
9331
mRNA_964: 9332 - Hypothetical Protein, at 86,721 to 89,416
9332
mRNA_965: 9333 - Hypothetical Protein, at 90,078 to 91,448
9333
mRNA_966: 9334 - BLAST probable GUS1-Glutamyl-tRNA synthetase [Ustilago hordei], at 92,031 to 92,569
9334
mRNA_967: 9335 - HMMPfam-Starch binding domain-PF00686,SUPERFAMILY--SSF49452, at 94,555 to 95,203
9335
Group
Condition
mRNA
_963
mRNA
_964
mRNA
_965
mRNA
_966
mRNA
_967
9331
9332
9333
9334
9335
facs on lipid accumulation
Sorted High BODIPY Gate
-6.0
+0.3
+0.0
-0.2
-1.8
facs on lipid accumulation
Sorted Low BODIPY Gate
-7.5
+0.3
+0.6
-0.1
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
-6.1
+0.3
+0.7
+0.2
-0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
-6.1
+0.5
-0.0
+0.1
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-6.2
+0.2
+0.4
-0.3
+0.6
growth on oleic acid
YNB Oleic Acid
-3.8
+0.0
+0.4
-0.1
-0.0
growth on ricinoleic acid
YNB Glucose
-1.8
+0.2
-0.0
-0.4
+0.4
ypd buoyancy
40 hrs Low Buoyancy
-1.2
+0.2
+0.3
-0.2
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.0
-0.6
-0.5
+0.9
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.2
+0.3
+0.7
-1.3
growth on ypd
YPD
-1.2
+0.2
+0.2
+0.0
+0.5
auxotrophy
YNB Glucose
-0.9
+0.0
-0.1
-0.3
+1.1
auxotrophy
Dropout Complete
-0.6
-0.2
-0.1
-0.1
+1.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
+0.0
-0.6
-0.2
+0.5
growth on oleic acid
YNB Glucose
-0.5
+0.4
+0.3
-0.1
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.0
-0.2
-0.2
+1.2
auxotrophy
YNB Glucose 75mM Arginine
-0.8
+0.1
+0.1
-0.4
+1.5
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
+0.4
+0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.9
-0.2
+0.4
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.1
-0.4
-0.1
+1.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.2
+0.2
-0.6
+0.4
+0.4
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