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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9334 and 9335 are separated by 1985 nucleotides
9335 and 9336 are separated by 1846 nucleotides
9336 and 9337 are separated by 2250 nucleotides
9337 and 9338 are separated by 177 nucleotides
mRNA_966: 9334 - BLAST probable GUS1-Glutamyl-tRNA synthetase [Ustilago hordei], at 92,031 to 92,569
9334
mRNA_967: 9335 - HMMPfam-Starch binding domain-PF00686,SUPERFAMILY--SSF49452, at 94,555 to 95,203
9335
mRNA_968: 9336 - KOG0970 DNA polymerase alpha, catalytic subunit, at 97,050 to 97,673
9336
mRNA_969: 9337 - Hypothetical Protein, at 99,924 to 100,860
9337
mRNA_970: 9338 - Hypothetical Protein, at 101,038 to 101,526
9338
Group
Condition
mRNA
_966
mRNA
_967
mRNA
_968
mRNA
_969
mRNA
_970
9334
9335
9336
9337
9338
ypd buoyancy
40 hrs No Buoyancy Separation
+0.7
-1.3
-3.0
-1.6
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-1.8
+0.2
+0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.3
+0.1
-1.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.5
-0.2
-0.8
N.D.
growth on ricinoleic acid
YNB Glucose
-0.4
+0.4
+0.1
-0.7
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
+0.0
-0.6
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.0
-0.3
+0.1
N.D.
growth on oleic acid
YNB Oleic Acid
-0.1
-0.0
+0.1
-0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.6
+0.2
-0.4
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.7
+0.5
+0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.2
+0.6
-0.5
N.D.
growth on ypd
YPD
+0.0
+0.5
-0.1
+0.0
N.D.
auxotrophy
Dropout Complete
-0.1
+1.0
-0.1
-0.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.5
+0.7
+0.7
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.4
+0.2
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.5
+0.9
+0.3
+0.1
N.D.
auxotrophy
YNB Glucose
-0.3
+1.1
+0.3
+0.0
N.D.
growth on oleic acid
YNB Glucose
-0.1
+0.5
+0.5
+0.6
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+1.2
+0.9
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+1.1
+0.3
+0.4
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.4
+1.5
+0.3
+0.4
N.D.
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