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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9339 and 9340 are separated by 427 nucleotides
9340 and 9341 are separated by 216 nucleotides
9341 and 9342 are separated by 513 nucleotides
9342 and 9343 are separated by 598 nucleotides
mRNA_971: 9339 - KOG2262 Sexual differentiation process protein ISP4, at 104,337 to 107,412
9339
mRNA_972: 9340 - Hypothetical Protein, at 107,840 to 108,806
9340
mRNA_973: 9341 - KOG4648 Uncharacterized conserved protein, contains LRR repeats, at 109,023 to 112,852
9341
mRNA_974: 9342 - K03236 EIF1A translation initiation factor 1A, at 113,366 to 114,313
9342
mRNA_975: 9343 - Hypothetical Protein, at 114,912 to 116,236
9343
Group
Condition
mRNA
_971
mRNA
_972
mRNA
_973
mRNA
_974
mRNA
_975
9339
9340
9341
9342
9343
growth on ypd
YPD
-0.1
-0.1
-0.3
N.D.
-0.0
growth on oleic acid
YNB Oleic Acid
-0.2
-0.0
+0.1
N.D.
-0.4
auxotrophy
YNB Glucose
-0.2
+0.0
-0.2
N.D.
-0.0
auxotrophy
Dropout Complete
-0.1
+0.0
+0.0
N.D.
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.0
-0.2
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.1
-0.3
N.D.
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
-0.0
-0.0
N.D.
-0.5
growth on oleic acid
YNB Glucose
-0.0
-0.0
+0.0
N.D.
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.0
-0.3
N.D.
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.1
+0.0
N.D.
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.1
-0.0
N.D.
+0.1
growth on ricinoleic acid
YNB Glucose
+0.1
+0.0
-0.1
N.D.
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.0
-0.1
-0.0
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.1
+0.2
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.0
-0.1
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.1
-0.2
N.D.
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.0
+0.2
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
-0.0
+0.0
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.1
+0.1
N.D.
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.3
+0.0
N.D.
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.1
+0.1
N.D.
+0.4
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