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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9341 and 9342 are separated by 513 nucleotides
9342 and 9343 are separated by 598 nucleotides
9343 and 9344 are separated by 2032 nucleotides
9344 and 9345 are separated by 362 nucleotides
mRNA_973: 9341 - KOG4648 Uncharacterized conserved protein, contains LRR repeats, at 109,023 to 112,852
9341
mRNA_974: 9342 - K03236 EIF1A translation initiation factor 1A, at 113,366 to 114,313
9342
mRNA_975: 9343 - Hypothetical Protein, at 114,912 to 116,236
9343
mRNA_976: 9344 - SUPERFAMILY--SSF54928, at 118,269 to 121,735
9344
mRNA_977: 9345 - KOG1378 Purple acid phosphatase, at 122,098 to 123,952
9345
Group
Condition
mRNA
_973
mRNA
_974
mRNA
_975
mRNA
_976
mRNA
_977
9341
9342
9343
9344
9345
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
N.D.
-0.5
-0.3
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
N.D.
-0.1
-0.2
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
N.D.
+0.1
-0.3
-0.4
growth on ricinoleic acid
YNB Glucose
-0.1
N.D.
-0.2
-0.2
+0.0
auxotrophy
Dropout Complete
+0.0
N.D.
-0.3
-0.1
+0.0
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
-0.4
-0.1
-0.0
growth on oleic acid
YNB Glucose
+0.0
N.D.
-0.2
+0.0
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
N.D.
+0.0
-0.0
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
N.D.
+0.1
-0.1
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
N.D.
+0.2
-0.3
+0.2
auxotrophy
YNB Glucose
-0.2
N.D.
-0.0
-0.1
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
N.D.
-0.2
-0.3
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.2
N.D.
+0.0
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
N.D.
+0.3
-0.0
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.0
N.D.
+0.1
+0.1
-0.0
growth on ypd
YPD
-0.3
N.D.
-0.0
+0.2
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.0
N.D.
-0.1
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
N.D.
+0.1
+0.3
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
N.D.
+0.4
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
+0.1
+0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
N.D.
+0.1
+0.1
+0.2
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