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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9343 and 9344 are separated by 2032 nucleotides
9344 and 9345 are separated by 362 nucleotides
9345 and 9346 are separated by 460 nucleotides
9346 and 9347 are separated by 314 nucleotides
mRNA_975: 9343 - Hypothetical Protein, at 114,912 to 116,236
9343
mRNA_976: 9344 - SUPERFAMILY--SSF54928, at 118,269 to 121,735
9344
mRNA_977: 9345 - KOG1378 Purple acid phosphatase, at 122,098 to 123,952
9345
mRNA_978: 9346 - Hypothetical Protein, at 124,413 to 124,580
9346
mRNA_979: 9347 - K03123 TFIIA2, GTF2A2, TOA2 transcription initiation factor TFIIA small subunit, at 124,895 to 125,472
9347
Group
Condition
mRNA
_975
mRNA
_976
mRNA
_977
mRNA
_978
mRNA
_979
9343
9344
9345
9346
9347
auxotrophy
Dropout Complete
-0.3
-0.1
+0.0
-1.4
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.2
-0.3
-1.0
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.3
-0.4
-0.8
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.3
+0.2
-1.3
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
-0.3
+0.0
-0.4
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.3
+0.1
-0.8
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
-0.1
+0.1
-1.5
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.1
-0.3
-0.8
N.D.
growth on ricinoleic acid
YNB Glucose
-0.2
-0.2
+0.0
-0.6
N.D.
auxotrophy
YNB Glucose
-0.0
-0.1
+0.0
-0.8
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.1
-0.0
-1.0
N.D.
growth on oleic acid
YNB Glucose
-0.2
+0.0
-0.3
-0.5
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.0
-0.0
-0.4
N.D.
growth on oleic acid
YNB Oleic Acid
-0.4
-0.1
-0.0
+0.5
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.0
-0.1
+0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
+0.2
-0.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.1
+0.1
-0.0
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.2
+0.2
-0.0
N.D.
growth on ypd
YPD
-0.0
+0.2
+0.2
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.3
-0.0
+0.9
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.1
+0.2
+1.1
N.D.
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