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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9351 and 9352 are separated by 575 nucleotides
9352 and 9353 are separated by 177 nucleotides
9353 and 9354 are separated by 749 nucleotides
9354 and 9355 are separated by 534 nucleotides
mRNA_983: 9351 - K02974 RP-S24e, RPS24 small subunit ribosomal protein S24e, at 130,660 to 132,036
9351
mRNA_984: 9352 - Hypothetical Protein, at 132,612 to 133,421
9352
mRNA_985: 9353 - K14399 CLP1, HERB polyribonucleotide 5'-hydroxyl-kinase, at 133,599 to 135,746
9353
mRNA_986: 9354 - K03781 katE, CAT, catB, srpA catalase, at 136,496 to 139,711
9354
mRNA_987: 9355 - K04773 sppA protease IV, at 140,246 to 143,358
9355
Group
Condition
mRNA
_983
mRNA
_984
mRNA
_985
mRNA
_986
mRNA
_987
9351
9352
9353
9354
9355
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.4
N.D.
-0.2
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.4
N.D.
+0.2
-0.4
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
N.D.
-0.1
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.2
N.D.
-0.4
+0.4
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.0
N.D.
-0.2
-0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
N.D.
-0.0
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.0
N.D.
-0.0
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.4
N.D.
-0.0
+0.4
growth on ypd
YPD
N.D.
-0.0
N.D.
+0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.2
N.D.
-0.0
+0.0
auxotrophy
Dropout Complete
N.D.
+0.3
N.D.
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.0
N.D.
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.1
N.D.
+0.3
+0.1
growth on ricinoleic acid
YNB Glucose
N.D.
+0.2
N.D.
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.2
N.D.
+0.1
+0.0
growth on oleic acid
YNB Oleic Acid
N.D.
+0.3
N.D.
+0.2
-0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.6
N.D.
-0.0
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.2
N.D.
+0.2
+0.2
auxotrophy
YNB Glucose
N.D.
+0.5
N.D.
+0.2
-0.0
growth on oleic acid
YNB Glucose
N.D.
+0.4
N.D.
+0.1
+0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.6
N.D.
+0.1
+0.0
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