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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9354 and 9355 are separated by 534 nucleotides
9355 and 9356 are separated by 153 nucleotides
9356 and 9357 are separated by 166 nucleotides
9357 and 9358 are separated by 396 nucleotides
mRNA_986: 9354 - K03781 katE, CAT, catB, srpA catalase, at 136,496 to 139,711
9354
mRNA_987: 9355 - K04773 sppA protease IV, at 140,246 to 143,358
9355
mRNA_988: 9356 - BLAST glycerol-3-phosphate O-acyltransferase [Sanghuangporu..., at 143,512 to 144,351
9356
mRNA_989: 9357 - Hypothetical Protein, at 144,518 to 146,452
9357
mRNA_990: 9358 - Hypothetical Protein, at 146,849 to 147,409
9358
Group
Condition
mRNA
_986
mRNA
_987
mRNA
_988
mRNA
_989
mRNA
_990
9354
9355
9356
9357
9358
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
+0.4
-4.1
-0.4
-2.6
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.0
-4.0
-0.1
-2.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+0.4
-4.1
+0.0
-1.7
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.2
-2.3
-0.3
-1.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.0
-2.4
-0.2
-1.6
growth on ricinoleic acid
YNB Glucose
-0.0
+0.1
-1.4
-0.4
-1.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.4
-2.1
-0.0
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.0
-0.1
-0.1
-2.1
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.0
+0.1
-0.2
-1.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.1
-1.8
+0.1
-0.5
auxotrophy
YNB Glucose
+0.2
-0.0
-0.3
-0.1
-1.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.2
-0.9
-0.1
-1.0
growth on oleic acid
YNB Glucose
+0.1
+0.2
-0.1
+0.0
-1.8
growth on oleic acid
YNB Oleic Acid
+0.2
-0.0
-0.5
+0.1
-1.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.0
-1.1
+0.0
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.0
-1.2
+0.2
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.2
+0.5
+0.1
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.0
+0.8
-0.2
-0.1
auxotrophy
Dropout Complete
-0.1
+0.0
+1.1
+0.3
-1.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.0
+1.1
-0.1
+0.3
growth on ypd
YPD
+0.2
-0.1
+2.6
-0.1
-0.5
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