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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9356 and 9357 are separated by 166 nucleotides
9357 and 9358 are separated by 396 nucleotides
9358 and 9359 are separated by 419 nucleotides
9359 and 9360 are separated by 378 nucleotides
mRNA_988: 9356 - BLAST glycerol-3-phosphate O-acyltransferase [Sanghuangporu..., at 143,512 to 144,351
9356
mRNA_989: 9357 - Hypothetical Protein, at 144,518 to 146,452
9357
mRNA_990: 9358 - Hypothetical Protein, at 146,849 to 147,409
9358
mRNA_991: 9359 - HMMPfam-Uncharacterised protein family, YAP/Alf4/glomulin-PF08568, at 147,829 to 149,137
9359
mRNA_992: 9360 - HMMPfam-OPT oligopeptide transporter protein-PF03169, at 149,516 to 150,268
9360
Group
Condition
mRNA
_988
mRNA
_989
mRNA
_990
mRNA
_991
mRNA
_992
9356
9357
9358
9359
9360
facs on lipid accumulation
Sorted High BODIPY Gate
-4.1
-0.4
-2.6
N.D.
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-4.1
+0.0
-1.7
N.D.
-0.7
facs on lipid accumulation
Sorted No BODIPY Gate
-4.0
-0.1
-2.2
N.D.
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-2.4
-0.2
-1.6
N.D.
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-2.3
-0.3
-1.4
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.9
-0.1
-1.0
N.D.
-0.6
growth on ricinoleic acid
YNB Glucose
-1.4
-0.4
-1.3
N.D.
+0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.1
-2.1
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-1.8
+0.1
-0.5
N.D.
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-2.1
-0.0
+0.1
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.2
-1.7
N.D.
+0.0
growth on oleic acid
YNB Glucose
-0.1
+0.0
-1.8
N.D.
+0.1
auxotrophy
YNB Glucose
-0.3
-0.1
-1.5
N.D.
+0.4
growth on oleic acid
YNB Oleic Acid
-0.5
+0.1
-1.3
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.1
+0.0
-0.2
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.2
+0.2
+0.2
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.5
+0.1
-0.0
N.D.
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.8
-0.2
-0.1
N.D.
-0.2
auxotrophy
Dropout Complete
+1.1
+0.3
-1.1
N.D.
+0.4
ypd buoyancy
40 hrs Median Buoyancy
+1.1
-0.1
+0.3
N.D.
-0.2
growth on ypd
YPD
+2.6
-0.1
-0.5
N.D.
-0.3
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