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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9359 and 9360 are separated by 378 nucleotides
9360 and 9361 are separated by 1365 nucleotides
9361 and 9362 are separated by 704 nucleotides
9362 and 9363 are separated by 676 nucleotides
mRNA_991: 9359 - HMMPfam-Uncharacterised protein family, YAP/Alf4/glomulin-PF08568, at 147,829 to 149,137
9359
mRNA_992: 9360 - HMMPfam-OPT oligopeptide transporter protein-PF03169, at 149,516 to 150,268
9360
mRNA_993: 9361 - HMMPfam-Zinc finger, C2H2 type-PF00096,HMMPfam-C2H2-type zinc finger-PF13894,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,SMART-zinc finger-SM00355,SUPERFAMILY--SSF57667, at 151,634 to 153,360
9361
mRNA_994: 9362 - K08513 VAMP4 vesicle-associated membrane protein 4, at 154,065 to 154,836
9362
mRNA_995: 9363 - KOG0065 Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily, at 155,513 to 160,267
9363
Group
Condition
mRNA
_991
mRNA
_992
mRNA
_993
mRNA
_994
mRNA
_995
9359
9360
9361
9362
9363
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.1
-0.5
-1.2
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.6
+0.0
+0.1
-0.3
growth on oleic acid
YNB Oleic Acid
N.D.
+0.2
-0.3
-0.3
-0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.0
-0.1
-0.4
-0.1
growth on oleic acid
YNB Glucose
N.D.
+0.1
-0.2
-0.0
-0.4
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.2
-0.1
-0.4
+0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.3
+0.2
-0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.3
-0.3
-0.4
+0.0
growth on ricinoleic acid
YNB Glucose
N.D.
+0.4
-0.5
-0.1
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.0
+0.0
+0.4
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.2
-0.1
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.2
+0.2
-0.0
-0.4
auxotrophy
Dropout Complete
N.D.
+0.4
-0.1
-0.4
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.7
+0.1
+0.6
+0.0
auxotrophy
YNB Glucose
N.D.
+0.4
-0.1
-0.5
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.1
+0.1
-0.6
+0.4
growth on ypd
YPD
N.D.
-0.3
+0.1
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.1
+0.1
+0.3
-0.4
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.2
+0.4
-0.3
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.2
-0.2
+0.3
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.2
+0.4
-0.2
+0.3
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