Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
9360 and 9361 are separated by 1365 nucleotides
9361 and 9362 are separated by 704 nucleotides
9362 and 9363 are separated by 676 nucleotides
9363 and 9364 are separated by 248 nucleotides
mRNA_992: 9360 - HMMPfam-OPT oligopeptide transporter protein-PF03169, at 149,516 to 150,268
9360
mRNA_993: 9361 - HMMPfam-Zinc finger, C2H2 type-PF00096,HMMPfam-C2H2-type zinc finger-PF13894,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,SMART-zinc finger-SM00355,SUPERFAMILY--SSF57667, at 151,634 to 153,360
9361
mRNA_994: 9362 - K08513 VAMP4 vesicle-associated membrane protein 4, at 154,065 to 154,836
9362
mRNA_995: 9363 - KOG0065 Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily, at 155,513 to 160,267
9363
mRNA_996: 9364 - K19791 FET3_5 iron transport multicopper oxidase, at 160,516 to 163,771
9364
Group
Condition
mRNA
_992
mRNA
_993
mRNA
_994
mRNA
_995
mRNA
_996
9360
9361
9362
9363
9364
growth on oleic acid
YNB Glucose
+0.1
-0.2
-0.0
-0.4
-5.5
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.1
-0.4
-0.1
-5.2
auxotrophy
YNB Glucose
+0.4
-0.1
-0.5
+0.1
-4.9
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.5
-1.2
+0.1
-3.4
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.1
-0.4
+0.0
-4.4
auxotrophy
Dropout Complete
+0.4
-0.1
-0.4
+0.1
-3.8
growth on ricinoleic acid
YNB Glucose
+0.4
-0.5
-0.1
-0.0
-3.7
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.2
+0.3
-0.1
-3.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.1
+0.3
-0.1
-2.9
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
-0.3
-0.4
+0.0
-2.7
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.7
+0.1
+0.6
+0.0
-2.4
growth on oleic acid
YNB Oleic Acid
+0.2
-0.3
-0.3
-0.2
-1.4
growth on ypd
YPD
-0.3
+0.1
+0.1
+0.0
-1.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
+0.0
+0.1
-0.3
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.2
-0.0
-0.4
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.1
+0.3
-0.4
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.4
-0.2
+0.3
-0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.4
-0.3
+0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.2
-0.1
-0.1
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.1
-0.6
+0.4
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.0
+0.4
-0.4
+0.2
remove
mRNA_992
plot
remove
mRNA_993
plot
remove
mRNA_994
remove
mRNA_995
plot
remove
mRNA_996
plot