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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9361 and 9362 are separated by 704 nucleotides
9362 and 9363 are separated by 676 nucleotides
9363 and 9364 are separated by 248 nucleotides
9364 and 9365 are separated by 235 nucleotides
mRNA_993: 9361 - HMMPfam-Zinc finger, C2H2 type-PF00096,HMMPfam-C2H2-type zinc finger-PF13894,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,SMART-zinc finger-SM00355,SUPERFAMILY--SSF57667, at 151,634 to 153,360
9361
mRNA_994: 9362 - K08513 VAMP4 vesicle-associated membrane protein 4, at 154,065 to 154,836
9362
mRNA_995: 9363 - KOG0065 Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily, at 155,513 to 160,267
9363
mRNA_996: 9364 - K19791 FET3_5 iron transport multicopper oxidase, at 160,516 to 163,771
9364
mRNA_997: 9365 - K08735 MSH2 DNA mismatch repair protein MSH2, at 164,007 to 168,056
9365
Group
Condition
mRNA
_993
mRNA
_994
mRNA
_995
mRNA
_996
mRNA
_997
9361
9362
9363
9364
9365
growth on oleic acid
YNB Glucose
-0.2
-0.0
-0.4
-5.5
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.4
-0.1
-5.2
-0.4
auxotrophy
YNB Glucose
-0.1
-0.5
+0.1
-4.9
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
-1.2
+0.1
-3.4
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.4
+0.0
-4.4
-0.3
growth on ricinoleic acid
YNB Glucose
-0.5
-0.1
-0.0
-3.7
-0.4
auxotrophy
Dropout Complete
-0.1
-0.4
+0.1
-3.8
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.4
+0.0
-2.7
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.3
-0.1
-3.2
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.3
-0.1
-2.9
+0.1
growth on oleic acid
YNB Oleic Acid
-0.3
-0.3
-0.2
-1.4
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.6
+0.0
-2.4
+0.0
growth on ypd
YPD
+0.1
+0.1
+0.0
-1.1
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.0
-0.4
-0.3
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.1
-0.3
-0.2
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.3
-0.4
-0.3
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.4
-0.4
+0.2
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.6
+0.4
+0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.4
-0.2
+0.3
-0.4
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.4
-0.3
+0.1
-0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.1
-0.1
+0.4
+0.3
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