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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9362 and 9363 are separated by 676 nucleotides
9363 and 9364 are separated by 248 nucleotides
9364 and 9365 are separated by 235 nucleotides
9365 and 9366 are separated by 245 nucleotides
mRNA_994: 9362 - K08513 VAMP4 vesicle-associated membrane protein 4, at 154,065 to 154,836
9362
mRNA_995: 9363 - KOG0065 Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily, at 155,513 to 160,267
9363
mRNA_996: 9364 - K19791 FET3_5 iron transport multicopper oxidase, at 160,516 to 163,771
9364
mRNA_997: 9365 - K08735 MSH2 DNA mismatch repair protein MSH2, at 164,007 to 168,056
9365
mRNA_998: 9366 - Hypothetical Protein, at 168,302 to 169,013
9366
Group
Condition
mRNA
_994
mRNA
_995
mRNA
_996
mRNA
_997
mRNA
_998
9362
9363
9364
9365
9366
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.1
-5.2
-0.4
-0.1
growth on oleic acid
YNB Glucose
-0.0
-0.4
-5.5
-0.2
+0.2
auxotrophy
YNB Glucose
-0.5
+0.1
-4.9
-0.5
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.2
+0.1
-3.4
-0.4
-0.5
auxotrophy
YNB Glucose 75mM Arginine
-0.4
+0.0
-4.4
-0.3
-0.0
growth on ricinoleic acid
YNB Glucose
-0.1
-0.0
-3.7
-0.4
-0.2
auxotrophy
Dropout Complete
-0.4
+0.1
-3.8
-0.2
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
+0.0
-2.7
-0.3
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.1
-3.2
+0.1
-0.0
growth on oleic acid
YNB Oleic Acid
-0.3
-0.2
-1.4
-0.0
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.1
-2.9
+0.1
+1.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.3
-0.2
+0.0
-1.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.6
+0.0
-2.4
+0.0
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.4
-0.3
+0.0
+0.3
growth on ypd
YPD
+0.1
+0.0
-1.1
+0.0
+0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.3
+0.1
-0.1
+0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
+0.4
+0.1
+0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.3
-0.4
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
-0.4
+0.2
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.4
-0.3
+0.0
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.1
+0.4
+0.3
+0.3
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