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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9365 and 9366 are separated by 245 nucleotides
9366 and 9367 are separated by 183 nucleotides
9367 and 9368 are separated by 293 nucleotides
9368 and 9369 are separated by 173 nucleotides
mRNA_997: 9365 - K08735 MSH2 DNA mismatch repair protein MSH2, at 164,007 to 168,056
9365
mRNA_998: 9366 - Hypothetical Protein, at 168,302 to 169,013
9366
mRNA_999: 9367 - HMMPfam-PAPA-1-like conserved region-PF04795, at 169,197 to 171,213
9367
mRNA_1000: 9368 - BLAST glycosyltransferase 2 [Moniliophthora roreri MCA ..., at 171,507 to 175,243
9368
mRNA_1001: 9369 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 175,417 to 177,383
9369
Group
Condition
mRNA
_997
mRNA
_998
mRNA
_999
mRNA
_1000
mRNA
_1001
9365
9366
9367
9368
9369
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.1
-1.0
-1.4
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
+0.2
-1.1
-0.7
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
-0.7
-0.0
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-1.2
+0.4
+0.5
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.1
-0.1
+0.3
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.0
-0.6
+0.2
-0.0
growth on ricinoleic acid
YNB Glucose
-0.4
-0.2
-0.0
+0.3
+0.3
auxotrophy
YNB Glucose
-0.5
+0.3
-0.1
+0.4
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+1.0
-0.9
-0.0
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.3
+0.3
-0.5
+0.4
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.0
+0.1
+0.5
+0.1
growth on ypd
YPD
+0.0
+0.4
-0.3
+0.4
-0.1
growth on oleic acid
YNB Glucose
-0.2
+0.2
-0.1
+0.6
+0.1
auxotrophy
Dropout Complete
-0.2
+0.1
-0.2
+1.0
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.3
-0.2
+0.8
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.2
+0.4
+1.0
-0.1
growth on oleic acid
YNB Oleic Acid
-0.0
+0.1
+0.3
+1.3
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.1
+0.3
+1.4
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.5
+0.6
+1.9
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.3
+1.3
+0.2
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
-0.5
+1.4
+2.1
+0.1
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