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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9368 and 9369 are separated by 173 nucleotides
9369 and 9370 are separated by 562 nucleotides
9370 and 9371 are separated by 1102 nucleotides
9371 and 9372 are separated by 1022 nucleotides
mRNA_1000: 9368 - BLAST glycosyltransferase 2 [Moniliophthora roreri MCA ..., at 171,507 to 175,243
9368
mRNA_1001: 9369 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 175,417 to 177,383
9369
mRNA_1002: 9370 - KOG3435 Mitochondrial/chloroplast ribosomal protein L54/L37, at 177,946 to 178,405
9370
mRNA_1003: 9371 - HMMPfam-Protein of unknown function (DUF2841)-PF11001, at 179,508 to 182,769
9371
mRNA_1004: 9372 - K02220 CLB1_2 G2/mitotic-specific cyclin 1/2, at 183,792 to 186,232
9372
Group
Condition
mRNA
_1000
mRNA
_1001
mRNA
_1002
mRNA
_1003
mRNA
_1004
9368
9369
9370
9371
9372
ypd buoyancy
40 hrs No Buoyancy Separation
-1.4
+0.0
N.D.
-0.6
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.7
-0.3
N.D.
+0.3
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.4
N.D.
-0.0
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.4
-0.2
N.D.
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.0
N.D.
-0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.1
N.D.
+0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-0.0
N.D.
-0.0
N.D.
growth on ypd
YPD
+0.4
-0.1
N.D.
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
-0.1
N.D.
+0.0
N.D.
auxotrophy
YNB Glucose
+0.4
+0.0
N.D.
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.1
N.D.
+0.3
N.D.
growth on ricinoleic acid
YNB Glucose
+0.3
+0.3
N.D.
+0.4
N.D.
growth on oleic acid
YNB Glucose
+0.6
+0.1
N.D.
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.8
+0.1
N.D.
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.5
+0.1
N.D.
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.0
-0.1
N.D.
+0.2
N.D.
auxotrophy
Dropout Complete
+1.0
+0.1
N.D.
+0.3
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+1.4
-0.2
N.D.
+0.1
N.D.
growth on oleic acid
YNB Oleic Acid
+1.3
-0.0
N.D.
+0.4
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.9
+0.2
N.D.
+0.7
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+2.1
+0.1
N.D.
+1.0
N.D.
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