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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9370 and 9371 are separated by 1102 nucleotides
9371 and 9372 are separated by 1022 nucleotides
9372 and 9373 are separated by 334 nucleotides
9373 and 9374 are separated by 240 nucleotides
mRNA_1002: 9370 - KOG3435 Mitochondrial/chloroplast ribosomal protein L54/L37, at 177,946 to 178,405
9370
mRNA_1003: 9371 - HMMPfam-Protein of unknown function (DUF2841)-PF11001, at 179,508 to 182,769
9371
mRNA_1004: 9372 - K02220 CLB1_2 G2/mitotic-specific cyclin 1/2, at 183,792 to 186,232
9372
mRNA_1005: 9373 - K08794 CAMK1 calcium/calmodulin-dependent protein kinase I, at 186,567 to 188,548
9373
mRNA_1006: 9374 - KOG4569 Predicted lipase, at 188,789 to 191,273
9374
Group
Condition
mRNA
_1002
mRNA
_1003
mRNA
_1004
mRNA
_1005
mRNA
_1006
9370
9371
9372
9373
9374
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.6
N.D.
-0.4
-0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.2
N.D.
-0.3
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.1
N.D.
-0.3
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.1
N.D.
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.0
N.D.
-0.1
+0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.0
N.D.
-0.0
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.3
N.D.
-0.6
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
N.D.
-0.1
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.0
N.D.
+0.1
+0.2
growth on oleic acid
YNB Oleic Acid
N.D.
+0.4
N.D.
-0.0
-0.0
growth on ypd
YPD
N.D.
+0.0
N.D.
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.1
N.D.
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.2
N.D.
+0.0
+0.1
growth on ricinoleic acid
YNB Glucose
N.D.
+0.4
N.D.
-0.2
+0.3
growth on oleic acid
YNB Glucose
N.D.
+0.3
N.D.
+0.0
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.7
N.D.
-0.3
+0.1
auxotrophy
YNB Glucose
N.D.
+0.2
N.D.
+0.4
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.3
N.D.
+0.3
+0.2
auxotrophy
Dropout Complete
N.D.
+0.3
N.D.
+0.3
+0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.4
N.D.
+0.3
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+1.0
N.D.
-0.2
+0.1
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