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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9373 and 9374 are separated by 240 nucleotides
9374 and 9375 are separated by 354 nucleotides
9375 and 9376 are separated by 341 nucleotides
9376 and 9377 are separated by 285 nucleotides
mRNA_1005: 9373 - K08794 CAMK1 calcium/calmodulin-dependent protein kinase I, at 186,567 to 188,548
9373
mRNA_1006: 9374 - KOG4569 Predicted lipase, at 188,789 to 191,273
9374
mRNA_1007: 9375 - HMMPfam-S1/P1 Nuclease-PF02265,SUPERFAMILY--SSF48537, at 191,628 to 193,033
9375
mRNA_1008: 9376 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 193,375 to 193,873
9376
mRNA_1009: 9377 - K12659 ARG56 N-acetyl-gamma-glutamyl-phosphate reductase / acetylglutamate kinase, at 194,159 to 197,453
9377
Group
Condition
mRNA
_1005
mRNA
_1006
mRNA
_1007
mRNA
_1008
mRNA
_1009
9373
9374
9375
9376
9377
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.2
-0.4
-0.4
-4.7
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.1
-0.5
-0.3
-3.9
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
+0.2
-0.9
-0.2
-3.2
growth on oleic acid
YNB Glucose
+0.0
+0.2
+0.1
-0.2
-4.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.1
-0.2
-0.2
-4.0
growth on ricinoleic acid
YNB Glucose
-0.2
+0.3
-0.3
-0.2
-4.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.2
-0.8
-0.0
-3.5
auxotrophy
YNB Glucose
+0.4
+0.1
+0.6
-0.2
-4.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.2
+0.2
-0.3
-3.2
growth on oleic acid
YNB Oleic Acid
-0.0
-0.0
+0.4
-0.1
-3.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
+0.1
+1.7
+0.0
-4.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.0
+1.0
-0.2
-2.9
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.0
+1.6
+0.4
-4.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.3
-1.0
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.1
+2.1
-0.4
-2.8
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.0
-0.6
+0.7
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.1
+0.1
+0.1
-0.3
growth on ypd
YPD
+0.2
+0.1
-0.4
-0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.0
-0.0
+0.2
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.2
-0.1
+0.1
-0.1
auxotrophy
Dropout Complete
+0.3
+0.2
+0.1
+0.0
-0.1
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