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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9376 and 9377 are separated by 285 nucleotides
9377 and 9378 are separated by 659 nucleotides
9378 and 9379 are separated by 1837 nucleotides
9379 and 9380 are separated by 487 nucleotides
mRNA_1008: 9376 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 193,375 to 193,873
9376
mRNA_1009: 9377 - K12659 ARG56 N-acetyl-gamma-glutamyl-phosphate reductase / acetylglutamate kinase, at 194,159 to 197,453
9377
mRNA_1010: 9378 - K16569 TUBGCP2, GCP2 gamma-tubulin complex component 2, at 198,113 to 201,234
9378
mRNA_1011: 9379 - Hypothetical Protein, at 203,072 to 203,287
9379
mRNA_1012: 9380 - Hypothetical Protein, at 203,775 to 207,320
9380
Group
Condition
mRNA
_1008
mRNA
_1009
mRNA
_1010
mRNA
_1011
mRNA
_1012
9376
9377
9378
9379
9380
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-4.7
N.D.
-0.6
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-4.5
N.D.
-0.8
-0.5
growth on oleic acid
YNB Glucose
-0.2
-4.8
N.D.
-0.3
-0.3
auxotrophy
YNB Glucose
-0.2
-4.4
N.D.
-0.5
-0.3
growth on ricinoleic acid
YNB Glucose
-0.2
-4.0
N.D.
-0.5
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-4.0
N.D.
-0.6
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-3.9
N.D.
-0.3
+0.0
growth on oleic acid
YNB Oleic Acid
-0.1
-3.1
N.D.
-0.7
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-3.5
N.D.
-0.2
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-3.2
N.D.
-0.0
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-2.9
N.D.
-0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-3.2
N.D.
-0.0
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
-4.0
N.D.
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-2.8
N.D.
-0.0
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.1
N.D.
-0.8
-0.3
auxotrophy
Dropout Complete
+0.0
-0.1
N.D.
-0.2
-0.5
growth on ypd
YPD
-0.1
-0.1
N.D.
-0.0
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.3
N.D.
+0.0
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.1
N.D.
+0.0
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.1
N.D.
+0.0
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.7
-0.3
N.D.
+0.2
+0.0
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