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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9381 and 9382 are separated by 424 nucleotides
9382 and 9383 are separated by 602 nucleotides
9383 and 9384 are separated by 371 nucleotides
9384 and 9385 are separated by 200 nucleotides
mRNA_1013: 9381 - K11761 NPL6, RSC7 chromatin structure-remodeling complex protein RSC7, at 207,547 to 209,466
9381
mRNA_1014: 9382 - Hypothetical Protein, at 209,891 to 213,073
9382
mRNA_1015: 9383 - HMMPfam-Thioesterase superfamily-PF03061,SUPERFAMILY--SSF54637, at 213,676 to 214,574
9383
mRNA_1016: 9384 - K14833 NOC2 nucleolar complex protein 2, at 214,946 to 217,442
9384
mRNA_1017: 9385 - BLAST putative pre-mrna-splicing factor 38b [Diaporthe ampe..., at 217,643 to 219,086
9385
Group
Condition
mRNA
_1013
mRNA
_1014
mRNA
_1015
mRNA
_1016
mRNA
_1017
9381
9382
9383
9384
9385
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.2
-0.2
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.0
-0.3
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.2
-0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.2
-0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.1
-0.1
N.D.
N.D.
auxotrophy
Dropout Complete
N.D.
+0.2
-0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.0
+0.1
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
-0.1
+0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.2
-0.1
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.1
+0.1
N.D.
N.D.
growth on oleic acid
YNB Glucose
N.D.
+0.0
+0.2
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.2
+0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
+0.3
+0.0
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.0
+0.3
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
+0.2
N.D.
N.D.
auxotrophy
YNB Glucose
N.D.
+0.1
+0.3
N.D.
N.D.
growth on ypd
YPD
N.D.
+0.1
+0.3
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.0
+0.4
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.3
+0.2
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.3
+0.2
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.1
+0.5
N.D.
N.D.
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