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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9392 and 9393 are separated by 794 nucleotides
9393 and 9394 are separated by 181 nucleotides
9394 and 9395 are separated by 890 nucleotides
9395 and 9396 are separated by 400 nucleotides
mRNA_1024: 9392 - HMMPfam-Thaumatin family-PF00314,PIRSF--PIRSF002703,PRINTS-Pathogenesis-related protein signature-PR00347,ProSiteProfiles-Thaumatin family profile.-PS51367,SMART-Thaumatin family-SM00205,SUPERFAMILY--SSF49870, at 230,632 to 231,986
9392
mRNA_1025: 9393 - BLAST MIND kinetochore complex component Nnf1 [Trichophyton..., at 232,781 to 233,762
9393
mRNA_1026: 9394 - HMMPfam-Protein of unknown function (DUF3317)-PF11779, at 233,944 to 234,631
9394
mRNA_1027: 9395 - Hypothetical Protein, at 235,522 to 235,827
9395
mRNA_1028: 9396 - HMMPfam-Domain of unknown function (DUF2411)-PF10304,SUPERFAMILY--SSF48371, at 236,228 to 240,194
9396
Group
Condition
mRNA
_1024
mRNA
_1025
mRNA
_1026
mRNA
_1027
mRNA
_1028
9392
9393
9394
9395
9396
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
N.D.
-2.7
-0.8
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-1.7
N.D.
-0.9
-0.6
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-1.9
N.D.
-0.8
-0.3
+0.0
growth on oleic acid
YNB Glucose
-0.7
N.D.
-0.9
-0.4
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.7
N.D.
-1.1
-0.5
+0.2
growth on oleic acid
YNB Oleic Acid
-0.4
N.D.
-1.0
-0.2
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
-0.8
-0.2
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
N.D.
-0.6
+0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.4
N.D.
-0.6
-0.0
+0.2
growth on ricinoleic acid
YNB Glucose
-0.3
N.D.
-0.3
+0.0
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
N.D.
-0.4
-0.1
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.2
N.D.
-0.4
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
N.D.
+0.1
-0.4
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.3
N.D.
-0.5
+0.3
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
N.D.
+0.2
-0.4
+0.2
auxotrophy
YNB Glucose
-0.1
N.D.
-0.2
+0.1
+0.1
auxotrophy
Dropout Complete
-0.2
N.D.
-0.3
+0.5
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
N.D.
+0.8
-0.3
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.3
N.D.
-0.0
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
N.D.
-0.1
+0.2
+0.1
growth on ypd
YPD
+0.4
N.D.
+0.0
+1.2
+0.1
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