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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9394 and 9395 are separated by 890 nucleotides
9395 and 9396 are separated by 400 nucleotides
9396 and 9397 are separated by 37 nucleotides
9397 and 9398 are separated by 411 nucleotides
mRNA_1026: 9394 - HMMPfam-Protein of unknown function (DUF3317)-PF11779, at 233,944 to 234,631
9394
mRNA_1027: 9395 - Hypothetical Protein, at 235,522 to 235,827
9395
mRNA_1028: 9396 - HMMPfam-Domain of unknown function (DUF2411)-PF10304,SUPERFAMILY--SSF48371, at 236,228 to 240,194
9396
mRNA_1029: 9397 - SMART-N-terminal domain of CBF1 interacting co-repressor CIR-SM01083, at 240,232 to 241,544
9397
mRNA_1030: 9398 - Hypothetical Protein, at 241,956 to 242,588
9398
Group
Condition
mRNA
_1026
mRNA
_1027
mRNA
_1028
mRNA
_1029
mRNA
_1030
9394
9395
9396
9397
9398
ypd buoyancy
40 hrs No Buoyancy Separation
-2.7
-0.8
-0.3
-0.3
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.9
-0.6
-0.3
-0.7
-0.0
growth on oleic acid
YNB Glucose
-0.9
-0.4
-0.1
-0.7
-0.1
growth on oleic acid
YNB Oleic Acid
-1.0
-0.2
+0.1
-0.3
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.1
-0.5
+0.2
-0.0
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.8
-0.3
+0.0
-0.2
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
+0.1
-0.2
-0.4
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.4
-0.2
-0.4
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.8
-0.2
+0.1
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.4
+0.2
-0.2
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.4
+0.2
-0.2
-0.3
+0.4
auxotrophy
YNB Glucose
-0.2
+0.1
+0.1
-0.3
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.6
-0.0
+0.2
+0.2
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.5
+0.3
+0.0
-0.1
+0.1
growth on ricinoleic acid
YNB Glucose
-0.3
+0.0
-0.0
+0.3
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.8
-0.3
+0.1
-0.3
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.3
+0.1
-0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
-0.1
+0.0
+0.5
-0.0
auxotrophy
Dropout Complete
-0.3
+0.5
+0.0
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.2
+0.1
+0.3
+0.3
growth on ypd
YPD
+0.0
+1.2
+0.1
-0.2
+0.2
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