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Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9398 and 9399 are separated by 1076 nucleotides
9399 and 9400 are separated by 766 nucleotides
9400 and 9401 are separated by 103 nucleotides
9401 and 9402 are separated by 37 nucleotides
mRNA_1030: 9398 - Hypothetical Protein, at 241,956 to 242,588
9398
mRNA_1031: 9399 - Hypothetical Protein, at 243,665 to 244,261
9399
mRNA_1032: 9400 - Hypothetical Protein, at 245,028 to 245,336
9400
mRNA_1033: 9401 - KOG4653 Uncharacterized conserved protein, at 245,440 to 249,406
9401
mRNA_1034: 9402 - SMART-N-terminal domain of CBF1 interacting co-repressor CIR-SM01083, at 249,444 to 250,770
9402
Group
Condition
mRNA
_1030
mRNA
_1031
mRNA
_1032
mRNA
_1033
mRNA
_1034
9398
9399
9400
9401
9402
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.6
-1.9
-1.4
-1.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.4
-1.0
-0.0
-1.1
growth on ypd
YPD
+0.2
+0.4
-0.9
-0.6
-1.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.6
-1.2
+0.4
+0.1
growth on oleic acid
YNB Glucose
-0.1
+0.7
-0.3
-0.7
-0.5
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.6
-0.4
-0.1
-0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.5
+0.9
-0.2
-0.7
growth on ricinoleic acid
YNB Glucose
-0.0
+0.1
-0.5
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.6
+0.3
+0.2
-0.7
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.5
-0.8
-0.1
+0.0
growth on oleic acid
YNB Oleic Acid
-0.0
+1.4
-0.0
-1.0
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
+1.3
-0.7
+0.2
-0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.8
-0.6
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.2
-1.2
+0.7
+1.0
auxotrophy
YNB Glucose
+0.1
+0.8
-0.2
-0.8
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.7
-1.0
+0.1
+0.6
auxotrophy
YNB Glucose 75mM Methionine
+0.4
+0.5
+0.1
-0.9
+0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.5
+0.6
+1.2
-0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.9
-0.1
-0.2
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.1
+1.3
+0.7
+0.4
auxotrophy
Dropout Complete
+0.1
+1.0
+0.8
-0.2
+0.8
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