Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 9401 and 9402 are separated by 37 nucleotides9402 and 9403 are separated by 411 nucleotides9403 and 9404 are separated by 152 nucleotides9404 and 9405 are separated by 113 nucleotides mRNA_1033: 9401 - KOG4653 Uncharacterized conserved protein, at 245,440 to 249,406 9401 mRNA_1034: 9402 - SMART-N-terminal domain of CBF1 interacting co-repressor CIR-SM01083, at 249,444 to 250,770 9402 mRNA_1035: 9403 - Hypothetical Protein, at 251,182 to 253,017 9403 mRNA_1036: 9404 - K12590 RRP46, EXOSC5 exosome complex component RRP46, at 253,170 to 254,250 9404 mRNA_1037: 9405 - K12160 SUMO, SMT3 small ubiquitin-related modifier, at 254,364 to 255,172 9405
Group Condition mRNA_1033 mRNA_1034 mRNA_1035 mRNA_1036 mRNA_1037
9401 9402 9403 9404 9405
ypd buoyancy 40 hrs No Buoyancy Separation -1.4 -1.4 -1.0 N.D. N.D.
growth on ypd YPD -0.6 -1.3 +0.3 N.D. N.D.
growth on oleic acid YNB Oleic Acid -1.0 -0.4 +0.0 N.D. N.D.
growth on oleic acid YNB Glucose -0.7 -0.5 -0.1 N.D. N.D.
ypd buoyancy 40 hrs High Buoyancy -0.1 -0.7 -0.1 N.D. N.D.
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.2 -0.7 +0.0 N.D. N.D.
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.2 -0.7 -0.2 N.D. N.D.
facs on lipid accumulation Sorted No BODIPY Gate -0.0 -1.1 +0.5 N.D. N.D.
growth on ricinoleic acid YNB Ricinoleic Acid +0.2 -0.7 -0.0 N.D. N.D.
auxotrophy YNB Glucose 75mM Methionine -0.9 +0.7 -0.1 N.D. N.D.
auxotrophy YNB Glucose -0.8 +0.3 +0.1 N.D. N.D.
growth on ricinoleic acid YNB Methylricinoleic Acid +0.1 -0.3 -0.2 N.D. N.D.
ypd buoyancy 40 hrs Low Buoyancy -0.1 +0.0 -0.2 N.D. N.D.
growth on ricinoleic acid YNB Glucose -0.0 -0.1 -0.0 N.D. N.D.
auxotrophy YNB Glucose 75mM Arginine -0.2 +0.4 +0.0 N.D. N.D.
facs on lipid accumulation Sorted High BODIPY Gate +0.4 +0.1 -0.1 N.D. N.D.
auxotrophy Dropout Complete -0.2 +0.8 -0.1 N.D. N.D.
ypd buoyancy 40 hrs Median Buoyancy +0.1 +0.6 -0.1 N.D. N.D.
facs on lipid accumulation Sorted Low BODIPY Gate +1.2 -0.5 +0.3 N.D. N.D.
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.7 +0.4 +0.0 N.D. N.D.
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.7 +1.0 +0.1 N.D. N.D.
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