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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9405 and 9406 are separated by 583 nucleotides
9406 and 9407 are separated by 115 nucleotides
9407 and 9408 are separated by 160 nucleotides
9408 and 9409 are separated by 470 nucleotides
mRNA_1037: 9405 - K12160 SUMO, SMT3 small ubiquitin-related modifier, at 254,364 to 255,172
9405
mRNA_1038: 9406 - HMMPfam-Protein of unknown function (DUF2034)-PF10356, at 255,756 to 256,586
9406
mRNA_1039: 9407 - K18723 GLE1 nucleoporin GLE1, at 256,702 to 258,919
9407
mRNA_1040: 9408 - HMMPfam-NADH(P)-binding-PF13460,SUPERFAMILY--SSF51735, at 259,080 to 260,427
9408
mRNA_1041: 9409 - K08504 BET1 blocked early in transport 1, at 260,898 to 261,462
9409
Group
Condition
mRNA
_1037
mRNA
_1038
mRNA
_1039
mRNA
_1040
mRNA
_1041
9405
9406
9407
9408
9409
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-1.8
N.D.
-0.2
-0.5
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.3
N.D.
-0.0
-0.9
growth on oleic acid
YNB Glucose
N.D.
-0.3
N.D.
-0.2
-0.5
auxotrophy
Dropout Complete
N.D.
-1.0
N.D.
-0.3
+0.3
auxotrophy
YNB Glucose
N.D.
-0.7
N.D.
-0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.3
N.D.
-0.3
-0.2
growth on oleic acid
YNB Oleic Acid
N.D.
-0.5
N.D.
-0.2
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.1
N.D.
-0.2
+0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.2
N.D.
-0.5
+0.1
growth on ypd
YPD
N.D.
+0.1
N.D.
-0.2
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.1
N.D.
-0.2
+0.1
growth on ricinoleic acid
YNB Glucose
N.D.
+0.2
N.D.
-0.3
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.2
N.D.
-0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.3
N.D.
-0.0
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.2
N.D.
+0.0
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.1
N.D.
-0.0
+0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
N.D.
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.0
N.D.
-0.1
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.0
N.D.
+0.0
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.6
N.D.
-0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.6
N.D.
+0.2
-0.1
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