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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9408 and 9409 are separated by 470 nucleotides
9409 and 9410 are separated by 120 nucleotides
9410 and 9411 are separated by 160 nucleotides
9411 and 9412 are separated by 1288 nucleotides
mRNA_1040: 9408 - HMMPfam-NADH(P)-binding-PF13460,SUPERFAMILY--SSF51735, at 259,080 to 260,427
9408
mRNA_1041: 9409 - K08504 BET1 blocked early in transport 1, at 260,898 to 261,462
9409
mRNA_1042: 9410 - Hypothetical Protein, at 261,583 to 262,732
9410
mRNA_1043: 9411 - K16732 PRC1 protein regulator of cytokinesis 1, at 262,893 to 265,321
9411
mRNA_1044: 9412 - K07765 MBTPS2 S2P endopeptidase, at 266,610 to 267,641
9412
Group
Condition
mRNA
_1040
mRNA
_1041
mRNA
_1042
mRNA
_1043
mRNA
_1044
9408
9409
9410
9411
9412
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
-0.9
-0.3
+0.3
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.5
-0.1
+0.4
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.2
+0.2
-0.0
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.0
+0.1
-0.0
-0.6
growth on oleic acid
YNB Glucose
-0.2
-0.5
-0.1
+0.0
+0.2
growth on ypd
YPD
-0.2
-0.1
-0.1
-0.1
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.0
-0.1
-0.2
+0.0
growth on oleic acid
YNB Oleic Acid
-0.2
+0.3
-0.1
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.1
-0.0
-0.1
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.5
+0.1
+0.0
-0.1
+0.4
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.1
-0.1
+0.2
-0.0
growth on ricinoleic acid
YNB Glucose
-0.3
+0.2
+0.0
+0.1
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.1
-0.0
-0.1
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
+0.4
-0.1
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.1
+0.1
-0.2
+0.3
auxotrophy
Dropout Complete
-0.3
+0.3
+0.0
-0.1
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.1
-0.2
+0.0
+0.7
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.3
-0.1
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.5
-0.1
-0.3
+0.5
auxotrophy
YNB Glucose
-0.1
-0.1
+0.0
+0.1
+0.7
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.1
-0.0
+0.1
+0.4
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