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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9414 and 9415 are separated by 413 nucleotides
9415 and 9416 are separated by 184 nucleotides
9416 and 9417 are separated by 76 nucleotides
9417 and 9418 are separated by 278 nucleotides
mRNA_1046: 9414 - K11346 ING4 inhibitor of growth protein 4, at 270,342 to 271,774
9414
mRNA_1047: 9415 - K19054 FXN frataxin, at 272,188 to 272,699
9415
mRNA_1048: 9416 - KOG1812 Predicted E3 ubiquitin ligase, at 272,884 to 273,999
9416
mRNA_1049: 9417 - K12878 THOC1 THO complex subunit 1, at 274,076 to 276,723
9417
mRNA_1050: 9418 - Hypothetical Protein, at 277,002 to 277,499
9418
Group
Condition
mRNA
_1046
mRNA
_1047
mRNA
_1048
mRNA
_1049
mRNA
_1050
9414
9415
9416
9417
9418
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
+0.0
-0.4
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
N.D.
-0.2
+0.1
-0.3
auxotrophy
Dropout Complete
-0.2
N.D.
-0.1
+0.3
-0.2
growth on ypd
YPD
-0.0
N.D.
-0.1
+0.0
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.3
N.D.
-0.2
+0.2
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.3
N.D.
+0.1
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.2
N.D.
-0.2
+0.4
-0.2
growth on ricinoleic acid
YNB Glucose
-0.3
N.D.
-0.0
-0.1
+0.4
auxotrophy
YNB Glucose
-0.3
N.D.
+0.0
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
N.D.
-0.2
+0.2
-0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
N.D.
-0.3
+0.1
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
N.D.
+0.2
-0.3
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.1
N.D.
+0.1
+0.2
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.0
N.D.
+0.3
-0.1
+0.1
growth on oleic acid
YNB Glucose
-0.1
N.D.
+0.0
+0.0
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
N.D.
+0.0
-0.0
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
N.D.
+0.7
+0.5
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.8
N.D.
+0.5
+0.2
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
N.D.
+0.2
+0.1
+0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.8
N.D.
+0.2
+0.0
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.6
N.D.
+0.5
+0.4
-0.1
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