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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9417 and 9418 are separated by 278 nucleotides
9418 and 9419 are separated by 84 nucleotides
9419 and 9420 are separated by 364 nucleotides
9420 and 9421 are separated by 244 nucleotides
mRNA_1049: 9417 - K12878 THOC1 THO complex subunit 1, at 274,076 to 276,723
9417
mRNA_1050: 9418 - Hypothetical Protein, at 277,002 to 277,499
9418
mRNA_1051: 9419 - SUPERFAMILY--SSF54928, at 277,584 to 281,665
9419
mRNA_1052: 9420 - K10896 FANCM fanconi anemia group M protein, at 282,030 to 286,830
9420
mRNA_1053: 9421 - KOG3856 Uncharacterized conserved protein, at 287,075 to 287,902
9421
Group
Condition
mRNA
_1049
mRNA
_1050
mRNA
_1051
mRNA
_1052
mRNA
_1053
9417
9418
9419
9420
9421
growth on oleic acid
YNB Oleic Acid
-0.4
-0.2
-0.1
-0.2
N.D.
growth on ypd
YPD
+0.0
-0.2
-0.3
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.6
+0.2
-0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.3
-0.1
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.4
+0.3
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.2
-0.2
-0.2
N.D.
growth on oleic acid
YNB Glucose
+0.0
+0.3
-0.2
-0.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
+0.2
-0.2
-0.1
N.D.
auxotrophy
Dropout Complete
+0.3
-0.2
-0.1
+0.0
N.D.
auxotrophy
YNB Glucose
+0.3
-0.1
-0.1
-0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.1
-0.0
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.4
-0.2
-0.0
-0.0
N.D.
growth on ricinoleic acid
YNB Glucose
-0.1
+0.4
-0.1
+0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.3
+0.0
+0.3
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
+0.4
+0.1
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
-0.2
+0.1
+0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.5
-0.1
-0.0
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.1
+0.2
+0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.1
+0.2
+0.3
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+0.3
+0.1
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
-0.1
+0.2
+0.2
N.D.
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