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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
9423 and 9424 are separated by 1271 nucleotides
9424 and 9425 are separated by 40 nucleotides
9425 and 9426 are separated by 321 nucleotides
9426 and 9427 are separated by 780 nucleotides
mRNA_1055: 9423 - KOG0590 Checkpoint kinase and related serine/threonine protein kinases, at 292,025 to 293,259
9423
mRNA_1056: 9424 - Hypothetical Protein, at 294,531 to 295,734
9424
mRNA_1057: 9425 - K00654 SPT serine palmitoyltransferase, at 295,775 to 298,601
9425
mRNA_1058: 9426 - HMMPfam-Protein of unknown function (DUF1115)-PF06544,PIRSF--PIRSF038021,SUPERFAMILY--SSF54495, at 298,923 to 300,090
9426
mRNA_1059: 9427 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 300,871 to 301,562
9427
Group
Condition
mRNA
_1055
mRNA
_1056
mRNA
_1057
mRNA
_1058
mRNA
_1059
9423
9424
9425
9426
9427
growth on ypd
YPD
-0.9
-0.9
N.D.
-0.4
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.4
N.D.
-0.5
-0.8
growth on oleic acid
YNB Oleic Acid
-0.9
+0.1
N.D.
-0.3
-0.5
growth on ricinoleic acid
YNB Glucose
-0.8
-0.4
N.D.
+0.2
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
-0.4
N.D.
-0.1
-0.1
auxotrophy
YNB Glucose
-0.2
-0.3
N.D.
+0.1
-0.4
growth on oleic acid
YNB Glucose
-0.4
+0.1
N.D.
+0.1
-0.5
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.1
N.D.
-0.3
-0.6
ypd buoyancy
40 hrs High Buoyancy
-0.6
+0.3
N.D.
+0.3
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
+0.1
N.D.
-0.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.3
N.D.
-0.1
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.1
N.D.
+0.1
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.0
N.D.
+0.3
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.9
+0.1
N.D.
+0.8
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.3
N.D.
+0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.4
+0.7
N.D.
+0.3
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.2
N.D.
+0.4
+0.0
auxotrophy
Dropout Complete
+0.8
+0.4
N.D.
+0.1
-0.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.3
N.D.
+0.6
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.9
+0.5
N.D.
-0.4
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.5
N.D.
+0.4
-0.1
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